期刊论文详细信息
Proteome Science
Proteomics analysis of differentially expressed proteins in chicken trachea and kidney after infection with the highly virulent and attenuated coronavirus infectious bronchitis virus in vivo
Shengwang Liu2  Xiangang Kong2  Demin Yu2  Junfeng Sun2  Xiaoli Liu2  Yuhao Shao2  Zongxi Han2  Zhongzan Cao1 
[1]College of Animal Science and Veterinary Medicine, Shenyang Agricultural University, Shenyang 110866, People's Republic of China
[2]Division of Avian Infectious Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, the Chinese Academy of Agricultural Sciences, Harbin 150001, People's Republic of China
关键词: Kidney;    Trachea;    Chicken;    Proteomics;    Infectious bronchitis virus;   
Others  :  817317
DOI  :  10.1186/1477-5956-10-24
 received in 2011-12-09, accepted in 2012-03-31,  发布年份 2012
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【 摘 要 】

Background

Infectious bronchitis virus (IBV) is first to be discovered coronavirus which is probably endemic in all regions with intensive impact on poultry production. In this study, we used two-dimensional gel electrophoresis (2-DE) and two-dimensional fluorescence difference gel electrophoresis (2-DIGE), coupled with matrix-assisted laser desorption/ionization time-of-flight tandem mass spectrometry (MALDI-TOF/TOF-MS), to explore the global proteome profiles of trachea and kidney tissues from chicken at different stages infected in vivo with the highly virulent ck/CH/LDL/97I P5 strain of infectious bronchitis virus (IBV) and the embryo-passaged, attenuated ck/CH/LDL/97I P115 strain.

Results

Fifty-eight differentially expressed proteins were identified. Results demonstrated that some proteins which had functions in cytoskeleton organization, anti-oxidative stress, and stress response, showed different change patterns in abundance from chicken infected with the highly virulent ck/CH/LDL/97I P5 strain and those given the embryo-passaged, attenuated P115 stain. In addition, the dynamic transcriptional alterations of 12 selected proteins were analyzed by the real-time RT-PCR, and western blot analysis confirmed the change in abundance of heat shock proteins (HSP) beta-1, annexin A2, and annexin A5.

Conclusions

The proteomic alterations described here may suggest that these changes to protein expression correlate with IBV virus' virulence in chicken, hence provides valuable insights into the interactions of IBV with its host and may also assist with investigations of the pathogenesis of IBV and other coronavirus infections.

【 授权许可】

   
2012 Cao et al; licensee BioMed Central Ltd.

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【 参考文献 】
  • [1]Carstens E: Report from the 40th meeting of the Executive Committee of the International Committee of Taxonomy of Viruses. 2009, 1571-1574.
  • [2]Han Z, Sun C, Yan B, Zhang X, Wang Y, Li C, Zhang Q, Ma Y, Shao Y, Liu Q, et al.: A 15-year analysis of molecular epidemiology of avian infectious bronchitis coronavirus in China. Infect Genet Evol 2011, 11:190-200.
  • [3]Enjuanes L, Almazan F, Sola I, Zuniga S: Biochemical aspects of coronavirus replication and virus-host interaction. Annu Rev Microbiol 2006, 60:211-230.
  • [4]Tang BS, Chan KH, Cheng VC, Woo PC, Lau SK, Lam CC, Chan TL, Wu AK, Hung IF, Leung SY, Yuen KY: Comparative host gene transcription by microarray analysis early after infection of the Huh7 cell line by severe acute respiratory syndrome coronavirus and human coronavirus 229E. J Virol 2005, 79:6180-6193.
  • [5]Dar A, Munir S, Vishwanathan S, Manuja A, Griebel P, Tikoo S, Townsend H, Potter A, Kapur V, Babiuk LA: Transcriptional analysis of avian embryonic tissues following infection with avian infectious bronchitis virus. Virus Res 2005, 110:41-55.
  • [6]Wang X, Rosa AJ, Oliverira HN, Rosa GJ, Guo X, Travnicek M, Girshick T: Transcriptome of local innate and adaptive immunity during early phase of infectious bronchitis viral infection. Viral Immunol 2006, 19:768-774.
  • [7]Ng LF, Hibberd ML, Ooi EE, Tang KF, Neo SY, Tan J, Murthy KR, Vega VB, Chia JM, Liu ET, Ren EC: A human in vitro model system for investigating genome-wide host responses to SARS coronavirus infection. BMC Infect Dis 2004, 4:34. BioMed Central Full Text
  • [8]Leong WF, Tan HC, Ooi EE, Koh DR, Chow VT: Microarray and real-time RT-PCR analyses of differential human gene expression patterns induced by severe acute respiratory syndrome (SARS) coronavirus infection of Vero cells. Microb Infect/Institut Pasteur 2005, 7:248-259.
  • [9]Raaben M, Groot Koerkamp MJ, Rottier PJ, de Haan CA: Mouse hepatitis coronavirus replication induces host translational shutoff and mRNA decay, with concomitant formation of stress granules and processing bodies. Cellular Microbiol 2007, 9:2218-2229.
  • [10]Haq K, Brisbin JT, Thanthrige-Don N, Heidari M, Sharif S: Transcriptome and proteome profiling of host responses to Marek's disease virus in chickens. Vet Immunol Immunopathol 2010, 138:292-302.
  • [11]Jiang XS, Tang LY, Dai J, Zhou H, Li SJ, Xia QC, Wu JR, Zeng R: Quantitative analysis of severe acute respiratory syndrome (SARS)-associated coronavirus-infected cells using proteomic approaches: implications for cellular responses to virus infection. Mol Cell Proteomics 2005, 4:902-913.
  • [12]Chen JH, Chang YW, Yao CW, Chiueh TS, Huang SC, Chien KY, Chen A, Chang FY, Wong CH, Chen YJ: Plasma proteome of severe acute respiratory syndrome analyzed by two-dimensional gel electrophoresis and mass spectrometry. Proc Natl Acad Sci USA 2004, 101:17039-17044.
  • [13]Zhang L, Zhang ZP, Zhang XE, Lin FS, Ge F: Quantitative proteomics analysis reveals BAG3 as a potential target to suppress severe acute respiratory syndrome coronavirus replication. J Virol 2010, 84:6050-6059.
  • [14]Vogels MW, van Balkom BW, Kaloyanova DV, Batenburg JJ, Heck AJ, Helms JB, Rottier PJ, de Haan CA: Identification of host factors involved in coronavirus replication by quantitative proteomics analysis. Proteomics 2011, 11:64-80.
  • [15]Emmott E, Wise H, Loucaides EM, Matthews DA, Digard P, Hiscox JA: Quantitative proteomics using SILAC coupled to LC-MS/MS reveals changes in the nucleolar proteome in influenza A virus-infected cells. J Proteome Res 2010, 9:5335-5345.
  • [16]Munday DC, Emmott E, Surtees R, Lardeau CH, Wu W, Duprex WP, Dove BK, Barr JN, Hiscox JA: Quantitative proteomic analysis of A549 cells infected with human respiratory syncytial virus. Mol Cell Proteomics 2010, 9:2438-2459.
  • [17]Coombs KM, Berard A, Xu W, Krokhin O, Meng X, Cortens JP, Kobasa D, Wilkins J, Brown EG: Quantitative proteomic analyses of influenza virus-infected cultured human lung cells. J Virol 2010, 84:10888-10906.
  • [18]van Diepen A, Brand HK, Sama I, Lambooy LH, van den Heuvel LP, van der Well L, Huynen M, Osterhaus AD, Andeweg AC, Hermans PW: Quantitative proteome profiling of respiratory virus-infected lung epithelial cells. J Proteomics 2010, 73:1680-1693.
  • [19]Emmott E, Smith C, Emmett SR, Dove BK, Hiscox JA: Elucidation of the avian nucleolar proteome by quantitative proteomics using SILAC and changes in cells infected with the coronavirus infectious bronchitis virus. Proteomics 2010, 10:3558-3562.
  • [20]Emmott E, Rodgers MA, Macdonald A, McCrory S, Ajuh P, Hiscox JA: Quantitative proteomics using stable isotope labeling with amino acids in cell culture reveals changes in the cytoplasmic, nuclear, and nucleolar proteomes in Vero cells infected with the coronavirus infectious bronchitis virus. Mol Cell Proteomics 2010, 9:1920-1936.
  • [21]Cao Z, Han Z, Shao Y, Geng H, Kong X, Liu S: Proteomic analysis of chicken embryonic trachea and kidney tissues after infection in ovo by avian infectious bronchitis coronavirus. Proteome Science 2011, 9:11. BioMed Central Full Text
  • [22]Liu S, Zhang X, Wang Y, Li C, Liu Q, Han Z, Zhang Q, Kong X, Tong G: Evaluation of the protection conferred by commercial vaccines and attenuated heterologous isolates in China against the CK/CH/LDL/97I strain of infectious bronchitis coronavirus. Vet J 2009, 179:130-136.
  • [23]Conrads KA, Yi M, Simpson KA, Lucas DA, Camalier CE, Yu LR, Veenstra TD, Stephens RM, Conrads TP, Beck GR Jr: A combined proteome and microarray investigation of inorganic phosphate-induced pre-osteoblast cells. Mol Cell Proteomics 2005, 4:1284-1296.
  • [24]Kuo CC, Kuo CW, Liang CM, Liang SM: A transcriptomic and proteomic analysis of the effect of CpG-ODN on human THP-1 monocytic leukemia cells. Proteomics 2005, 5:894-906.
  • [25]Scheurer SB, Rybak JN, Rosli C, Neri D, Elia G: Modulation of gene expression by hypoxia in human umbilical cord vein endothelial cells: A transcriptomic and proteomic study. Proteomics 2004, 4:1737-1760.
  • [26]Martin SA, Mohanty BP, Cash P, Houlihan DF, Secombes CJ: Proteome analysis of the Atlantic salmon (Salmo salar) cell line SHK-1 following recombinant IFN-gamma stimulation. Proteomics 2007, 7:2275-2286.
  • [27]Perlman S, Netland J: Coronaviruses post-SARS: update on replication and pathogenesis. Nat Rev Microbiol 2009, 7:439-450.
  • [28]Liu S, Han Z, Chen J, Liu X, Shao Y, Kong X, Tong G, Rong J: S1 gene sequence heterogeneity of a pathogenic infectious bronchitis virus strain and its embryo-passaged, attenuated derivatives. Avian Pathol 2007, 36:231-234.
  • [29]Dove BK, You JH, Reed ML, Emmett SR, Brooks G, Hiscox JA: Changes in nucleolar morphology and proteins during infection with the coronavirus infectious bronchitis virus. Cell Microbiol 2006, 8:1147-1157.
  • [30]Radtke K, Dohner K, Sodeik B: Viral interactions with the cytoskeleton: a hitchhiker's guide to the cell. Cell Microbiol 2006, 8:387-400.
  • [31]Stefanovic S, Windsor M, Nagata KI, Inagaki M, Wileman T: Vimentin rearrangement during African swine fever virus infection involves retrograde transport along microtubules and phosphorylation of vimentin by calcium calmodulin kinase II. J Virol 2005, 79:11766-11775.
  • [32]Hayes MJ, Longbottom RE, Evans MA, Moss SE: Annexinopathies. Subcell Biochem 2007, 45:1-28.
  • [33]Wright JF, Kurosky A, Pryzdial EL, Wasi S: Host cellular annexin II is associated with cytomegalovirus particles isolated from cultured human fibroblasts. J Virol 1995, 69:4784-4791.
  • [34]LeBouder F, Morello E, Rimmelzwaan GF, Bosse F, Pechoux C, Delmas B, Riteau B: Annexin II incorporated into influenza virus particles supports virus replication by converting plasminogen into plasmin. J Virol 2008, 82:6820-6828.
  • [35]Gonzalez-Reyes S, Garcia-Manso A, del Barrio G, Dalton KP, Gonzalez-Molleda L, Arrojo-Fernandez J, Nicieza I, Parra F: Role of annexin A2 in cellular entry of rabbit vesivirus. J Gen Virol 2009, 90:2724-2730.
  • [36]Raynor CM, Wright JF, Waisman DM, Pryzdial EL: Annexin II enhances cytomegalovirus binding and fusion to phospholipid membranes. Biochemistry 1999, 38:5089-5095.
  • [37]Harrist AV, Ryzhova EV, Harvey T, Gonzalez-Scarano F: Anx2 interacts with HIV-1 Gag at phosphatidylinositol (4,5) bisphosphate-containing lipid rafts and increases viral production in 293T cells. PLoS One 2009, 4:e5020.
  • [38]Ryzhova EV, Vos RM, Albright AV, Harrist AV, Harvey T, Gonzalez-Scarano F: Annexin 2: a novel human immunodeficiency virus type 1 Gag binding protein involved in replication in monocyte-derived macrophages. J Virol 2006, 80:2694-2704.
  • [39]Beaton AR, Rodriguez J, Reddy YK, Roy P: The membrane trafficking protein calpactin forms a complex with bluetongue virus protein NS3 and mediates virus release. Proc Natl Acad Sci USA 2002, 99:13154-13159.
  • [40]Backes P, Quinkert D, Reiss S, Binder M, Zayas M, Rescher U, Gerke V, Bartenschlager R, Lohmann V: Role of annexin A2 in the production of infectious hepatitis C virus particles. J Virol 2010, 84:5775-5789.
  • [41]Ravassa S, Bennaghmouch A, Kenis H, Lindhout T, Hackeng T, Narula J, Hofstra L, Reutelingsperger C: Annexin A5 down-regulates surface expression of tissue factor: a novel mechanism of regulating the membrane receptor repertoir. J Biol Chem 2005, 280:6028-6035.
  • [42]Rand JH, Wu XX, Giesen P: A possible solution to the paradox of the "lupus anticoagulant": antiphospholipid antibodies accelerate thrombin generation by inhibiting annexin-V. Thromb Haemost 1999, 82:1376-1377.
  • [43]Yesilkaya H, Kadioglu A, Gingles N, Alexander JE, Mitchell TJ, Andrew PW: Role of manganese-containing superoxide dismutase in oxidative stress and virulence of Streptococcus pneumoniae. Infect Immun 2000, 68:2819-2826.
  • [44]Suresh DR, Annam V, Pratibha K, Prasad BV: Total antioxidant capacity-a novel early bio-chemical marker of oxidative stress in HIV infected individuals. J Biomed Sci 2009, 16:61. BioMed Central Full Text
  • [45]Zhang H, Guo X, Ge X, Chen Y, Sun Q, Yang H: Changes in the cellular proteins of pulmonary alveolar macrophage infected with porcine reproductive and respiratory syndrome virus by proteomics analysis. J Proteome Res 2009, 8:3091-3097.
  • [46]Lai CC, Jou MJ, Huang SY, Li SW, Wan L, Tsai FJ, Lin CW: Proteomic analysis of up-regulated proteins in human promonocyte cells expressing severe acute respiratory syndrome coronavirus 3C-like protease. Proteomics 2007, 7:1446-1460.
  • [47]Vester D, Rapp E, Kluge S, Genzel Y, Reichl U: Virus-host cell interactions in vaccine production cell lines infected with different human influenza A virus variants: a proteomic approach. J Proteomics 2010, 73:1656-1669.
  • [48]Samali A, Robertson JD, Peterson E, Manero F, van Zeijl L, Paul C, Cotgreave IA, Arrigo AP, Orrenius S: Hsp27 protects mitochondria of thermotolerant cells against apoptotic stimuli. Cell Stress Chaperones 2001, 6:49-58.
  • [49]Concannon CG, Gorman AM, Samali A: On the role of Hsp27 in regulating apoptosis. Apoptosis 2003, 8:61-70.
  • [50]Ferns G, Shams S, Shafi S: Heat shock protein 27: its potential role in vascular disease. Int J Exp Pathol 2006, 87:253-274.
  • [51]Liu C, Xu HY, Liu DX: Induction of Caspase-Dependent Apoptosis in Cultured Cells by the Avian Coronavirus Infectious Bronchitis Virus. J Virol 2001, 75:6402-6409.
  • [52]Li F: Cell cycle arrest and apoptosis induced by the coronavirus infectious bronchitis virus in the absence of p53. Virology 2007, 365:435-445.
  • [53]Dove B, Brooks G, Bicknell K, Wurm T, Hiscox JA: Cell Cycle Perturbations Induced by Infection with the Coronavirus Infectious Bronchitis Virus and Their Effect on Virus Replication. J Virol 2006, 80:4147-4156.
  • [54]Maynard ND, Gutschow MV, Birch EW, Covert MW: The virus as metabolic engineer. Biotechnol J 2010, 5:686-694.
  • [55]Kim JW, Dang CV: Multifaceted roles of glycolytic enzymes. Trends Biochem Sci 2005, 30:142-150.
  • [56]Tabuse Y, Nabetani T, Tsugita A: Proteomic analysis of protein expression profiles during Caenorhabditis elegans development using two-dimensional difference gel electrophoresis. Proteomics 2005, 5:2876-2891.
  • [57]Gorg A, Weiss W, Dunn MJ: Current two-dimensional electrophoresis technology for proteomics. Proteomics 2004, 4:3665-3685.
  • [58]Liu S, Zhang X, Gong L, Yan B, Li C, Han Z, Shao Y, Li H, Kong X: Altered pathogenicity, immunogenicity, tissue tropism and 3'-7 kb region sequence of an avian infectious bronchitis coronavirus strain after serial passage in embryos. Vaccine 2009, 27:4630-4640.
  • [59]Jones RM, Ellis RJ, Cox WJ, Errington J, Fuller C, Irvine RM, Wakeley PR: Development and Validation of RT-PCR Tests for the Detection and S1 Genotyping of Infectious Bronchitis Virus and Other Closely Related Gammacoronaviruses Within Clinical Samples. Transbound Emerg Dis 2011, 58:411-420.
  • [60]McCarthy FM, Bridges SM, Wang N, Magee GB, Williams WP, Luthe DS, Burgess SC: AgBase: a unified resource for functional analysis in agriculture. Nucleic Acids Res 2007, 35:D599-D603.
  • [61]Livak KJ, Schmittgen TD: Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 2001, 25:402-408.
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