期刊论文详细信息
BMC Veterinary Research
The early immune response to infection of chickens with Infectious Bronchitis Virus (IBV) in susceptible and resistant birds
David W. Burt2  Pete Kaiser2  David Cavanagh1  Jean-Remy Sadeyen1  Jacqueline Smith2 
[1] The Pirbright Institute, Compton Laboratory, Compton RG20 7NN, Berkshire, UK;The Roslin Institute & R(D)SVS, University of Edinburgh, Easter Bush, Midlothian EH25 9RG, UK
关键词: Candidate gene;    Disease resistance;    Microarray;    Infectious bronchitis virus;    Chicken;   
Others  :  1228777
DOI  :  10.1186/s12917-015-0575-6
 received in 2015-07-01, accepted in 2015-10-05,  发布年份 2015
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【 摘 要 】

Background

Infectious Bronchitis is a highly contagious respiratory disease which causes tracheal lesions and also affects the reproductive tract and is responsible for large economic losses to the poultry industry every year. This is due to both mortality (either directly provoked by IBV itself or due to subsequent bacterial infection) and lost egg production. The virus is difficult to control by vaccination, so new methods to curb the impact of the disease need to be sought. Here, we seek to identify genes conferring resistance to this coronavirus, which could help in selective breeding programs to rear chickens which do not succumb to the effects of this disease.

Methods

Whole genome gene expression microarrays were used to analyse the gene expression differences, which occur upon infection of birds with Infectious Bronchitis Virus (IBV). Tracheal tissue was examined from control and infected birds at 2, 3 and 4 days post-infection in birds known to be either susceptible or resistant to the virus. The host innate immune response was evaluated over these 3 days and differences between the susceptible and resistant lines examined.

Results

Genes and biological pathways involved in the early host response to IBV infection were determined andgene expression differences between susceptible and resistant birds were identified. Potential candidate genes for resistance to IBV are highlighted.

Conclusions

The early host response to IBV is analysed and potential candidate genes for disease resistance are identified. These putative resistance genes can be used as targets for future genetic and functional studies to prove a causative link with resistance to IBV.

【 授权许可】

   
2015 Smith et al.

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【 参考文献 】
  • [1]Schalk AF, Hawn MC. An apparently new respiratory disease in baby chicks. J Am Vet Med Assoc. 1931; 78:413-422.
  • [2]Beach JR, Schalm OW. Studies of infectious coryza of chickens with special reference to its etiology. Poult Sci. 1936; 15:199-206.
  • [3]Beaudette FR, Hudson CB. Cultivation of the virus of infectious bronchitis. J Am Vet Med Assoc. 1937; 90:51-58.
  • [4]Cavanagh D. Coronavirus avian infectious bronchitis virus. Vet Res. 2007; 38:281-297.
  • [5]Enjuanes L, Sola I, Zúñiga S, Almazán F. Coronavirus Replication and Interaction with Host. In: Animal Viruses: Molecular Biology. Mettenleiter TC, Sobrino F, editors. Caister Academic Press, Norfolk; 2008: p.149-202.
  • [6]Casais R, Dove B, Cavanagh D, Britton P. Recombinant avian infectious bronchitis virus expressing a heterologous spike gene demonstrates that the spike protein is a determinant of cell tropism. J Virol. 2003; 77:9084-9089.
  • [7]Asif M, Lowenthal JW, Ford ME, Schat KA, Kimpton WG, Bean AG. Interleukin-6 expression after infectious bronchitis virus infection in chickens. Viral Immunol. 2007; 20:479-486.
  • [8]Jackwood MW. Review of infectious bronchitis virus around the world. Avian Dis. 2012; 56:634-641.
  • [9]Meulemans G, Van den Berg TP. Nephropathogenic avian infectious bronchitis viruses. World Poult Sci. 1998; 54:145-153.
  • [10]Ariaans MP, Matthijs MG, van Haarlem D, van de Haar P, van Eck JH, Hensen EJ, Vervelde L. The role of phagocytic cells in enhanced susceptibility of broilers to colibacillosis after Infectious Bronchitis Virus infection. Vet Immunol Immunopathol. 2008; 123:240-250.
  • [11]Matthijs MG, van Eck JH, Landman WJ, Stegeman JA. Ability of Massachusetts-type infectious bronchitis virus to increase colibacillosis susceptibility in commercial broilers: a comparison between vaccine and virulent field virus. Avian Pathol. 2003; 32:473-481.
  • [12]Jackwood MW, de Wit S. Infectious Bronchitis. In: Diseases of Poultry. 3rd ed. Swayne DE, Glisson JR, McDougald LR, Nolan LK, Suarez DL, Nair VL, editors. Wiley-Blackwell, UK; 2013: p.139-160.
  • [13]Worthington KJ, Currie RJW, Jones RC. A reverse transcriptase–polymerase chain reaction survey of infectious IBV infection bronchitis virus genotypes in Western Europe from 2002 to 2006. Avian Pathol. 2008; 37:247-257.
  • [14]Ignjatovic J, Gould G, Sapats S. Isolation of a variant infectious bronchitis virus in Australia that further illustrates diversity among emerging strains. Arch Virol. 2006; 151:1567-1585.
  • [15]Mase M, Kawanishi N, Ootani Y, Murayama K, Karino A, Inoue T. A novel genotype of avian infectious bronchitis virus isolated in Japan in 2009. J Vet Med Sci. 2010; 72:1265-1268.
  • [16]Banat GR, Tkalcic S, Dzielawa JA, Jackwood MW, Saggese MD, Yates L, Kopulos R, Briles WE, Collisson EW. Association of the chicken MHC B haplotypes with resistance to avian coronavirus. Dev Comp Immunol. 2013; 39:430-437.
  • [17]Dar A, Munir S, Vishwanathan S, Manuja A, Griebel P, Tikoo S, Townsend H, Potter A, Kapur V, Babiuk LA. Transcriptional analysis of avian embryonic tissues following infection with avian infectious bronchitis virus. Virus Res. 2005; 110:41-55.
  • [18]Wang X, Rosa AJM, Oliverira HN, Rosa GJM, Guo X, Travnicek M, Girshick T. Transcriptome of Local Innate and Adaptive Immunity during Early Phase of Infectious Bronchitis Viral Infection. Viral Immunol. 2006; 19:768-774.
  • [19]Drosten C, Günther S, Preiser W, van der Werf S, Brodt HR, Becker S, Rabenau H, Panning M, Kolesnikova L, Fouchier RA, Berger A, Burguière AM, Cinatl J, Eickmann M, Escriou N, Grywna K, Kramme S, Manuguerra JC, Müller S, Rickerts V, Stürmer M, Vieth S, Klenk HD, Osterhaus AD, Schmitz H, Doerr HW. Identification of a novel coronavirus in patients with severe acute respiratory syndrome. N Engl J Med. 2003; 348:1967-1976.
  • [20]Ksiazek TG, Erdman D, Goldsmith CS, Zaki SR, Peret T, Emery S, Tong S, Urbani C, Comer JA, Lim W, Rollin PE, Dowell SF, Ling AE, Humphrey CD, Shieh WJ, Guarner J, Paddock CD, Rota P, Fields B, DeRisi J, Yang JY, Cox N, Hughes JM, LeDuc JW, Bellini WJ, Anderson LJ. A novel coronavirus associated with severe acute respiratory syndrome. N Engl J Med. 2003; 348:1953-1966.
  • [21]Cook J, Otsuki K, Huggins M, Bumstead N. Investigations into resistance of chicken lines to infection with infectious bronchitis virus. Adv Exp Med Biol. 1990; 276:491-496.
  • [22]Stone HA. Use of highly inbred chickens in research. USDA Agricultural Research Service Technical Bulletin. 1975, No.1514, Washington, DC.
  • [23]Cole RK. Studies on genetic resistance to Marek's disease. Avian Dis. 1968; 12:9-28.
  • [24]Guide to Probe Logarithmic Intensity Error (PLIER) Estimation. Affymetrix I, Santa Clara; 2005.
  • [25]Talloen W, Clevert DA, Hochreiter S, Amaratunga D, Bijnens L, Kass S, Göhlmann HW. I/NI-calls for the exclusion of non-informative genes: a highly effective filtering tool for microarray data. Bioinformatics. 2007; 23:2897-2902.
  • [26]R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna; 2007. http://www. R-project.org
  • [27]Khatri P, Sellamuthu S, Malhotra P, Amin K, Done A, Draghici S. Recent additions and improvements to the Onto-Tools. Nucleic Acids Res. 2005; 33(Web Server issue):W762-5.
  • [28]Pathway Express. http://vortex. cs.wayne.edu/projects.htm webcite
  • [29]Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000; 28:27-30.
  • [30]Ingenuity Pathway Analysis. [Ingenuity® Systems. www. ingenuity.com webcite
  • [31]Expander. http://acgt. cs.tau.ac.il/expander/expander.html webcite
  • [32]Eldaghayes I, Rothwell L, Williams A, Withers D, Balu S, Davison F, Kaiser P. Infectious bursal disease virus: strains that differ in virulence differentially modulate the innate immune response to infection in the chicken bursa. Viral Immunol. 2006; 19:83-91.
  • [33]Poh TY, Pease J, Young JR, Bumstead N, Kaiser P. Re-evaluation of chicken CXCR1 determines the true gene structure: CXCLi1 (K60) and CXCLi2 (CAF/interleukin-8) are ligands for this receptor. J Biol Chem. 2008; 283:16408-16415.
  • [34]Rothwell L, Hu T, Wu Z, Kaiser P. Chicken interleukin-21 is costimulatory for T cells and blocks maturation of dendritic cells. Dev Comp Immunol. 2012; 36:475-482.
  • [35]Guo X, Rosa AJM, Chen D-G, Wang X. Molecular mechanisms of primary and secondary mucosal immunity using avian infectious bronchitis virus as a model system. Vet Immunol Immunopathol. 2008; 121:332-343.
  • [36]Draghici S, Khatri P, Tarca AL, Amin K, Done A, Voichita C, Georgescu C, Romero R. A systems biology approach for pathway level analysis. Genome Res. 2007; 17:1537-1545.
  • [37]Kameka AM, Haddadi S, Kim DS, Cork SC, Abdul-Careem MF. Induction of innate immune response following infectious bronchitis corona virus infection in the respiratory tract of chickens. Virology. 2014; 450–451:114-121.
  • [38]Yang N, Ma P, Lang J, Zhang Y, Deng J, JU X, Zhang G, Jiang C. Phosphatidylinositol 4-Kinase IIIβ Is Required for Severe Acute Respiratory Syndrome Coronavirus Spike-mediated Cell Entry. J Biol Chem. 2012; 287:8457-8467.
  • [39]Favoreel HW, Van de Walle GR, Nauwynck HJ, Pensaert MB. Virus complement evasion strategies. J Gen Virol. 2003; 84:1-15.
  • [40]Ariaans MP, van de Haar PM, Hensen EJ, Vervelde L. Infectious Bronchitis Virus induces acute interferon-gamma production through polyclonal stimulation of chicken leukocytes. Virology. 2009; 385:68-73.
  • [41]Vervelde L, Matthijs MG, van Haarlem DA, de Wit JJ, Jansen CA. Rapid NK-cell activation in chicken after infection with infectious bronchitis virus M41. Vet Immunol Immunopathol. 2013; 151:337-341.
  • [42]Kint J, Fernandez-Gutierrez M, Maier HJ, Britton P, Langereis MA, Koumans J, Wiegertjes GF, Forlenza M. Activation of the chicken type I IFN response by infectious bronchitis coronavirus. J Virol. 2015; 89:1156-1167.
  • [43]Sharan R, Maron-Katz A, Shamir R. CLICK and EXPANDER: a system for clustering and visualizing gene expression data. Bioinformatics. 2003; 19:1787-1799.
  • [44]Emmott E, Munday D, Bickerton E, Britton P, Rodgers MA, Whitehouse A, Zhou EM, Hiscox JA. The cellular interactome of the coronavirus infectious bronchitis virus nucleocapsid protein and functional implications for virus biology. J Virol. 2013; 87:9486-9500.
  • [45]Crinion RA. Egg quality and production following infectious bronchitis virus exposure at one day old. Poult Sci. 1972; 51:582-585.
  • [46]Brionne A, Nys Y, Hennequet-Antier C, Gautron J. Hen uterine gene expression profiling during eggshell formation reveals putative proteins involved in the supply of minerals or in the shell mineralization process. BMC Genomics. 2014; 15:220. BioMed Central Full Text
  • [47]Cong F, Liu X, Han Z, Shao Y, Kong X, Liu S. Transcriptome analysis of chicken kidney tissues following coronavirus avian infectious bronchitis virus infection. BMC Genomics. 2013; 14:743. BioMed Central Full Text
  • [48]Liu C, Xu HY, Liu DX. Induction of caspase-dependent apoptosis in cultured cells by the avian coronavirus infectious bronchitis virus. J Virol. 2001; 75:6402-6409.
  • [49]Nii T, Isobe N, Yoshimura Y. Effects of avian infectious bronchitis virus antigen on eggshell formation and immunoreaction in hen oviduct. Theriogenology. 2014; 81:1129-1138.
  • [50]Goodbourn S, Didcock L, Randall RE. Interferons: cell signalling, immune modulation, antiviral response and virus countermeasures. J Gen Virol. 2000; 81:2341-2364.
  • [51]Haller O, Frese M, Kochs G. Mx proteins: Mediators of innate resistance to RNA viruses. Rev Sci Technol. 1998; 17:220-230.
  • [52]Perreira JM, Chin CR, Feeley EM, Brass AL. IFITMs restrict the replication of multiple pathogenic viruses. J Mol Biol. 2013; 425:4937-4955.
  • [53]Smith J, Sadeyen JR, Paton IR, Hocking PM, Salmon N, Fife M, Nair V, Burt DW, Kaiser P. Systems analysis of immune responses in Marek's disease virus-infected chickens identifies a gene involved in susceptibility and highlights a possible novel pathogenicity mechanism. J Virol. 2011; 85:11146-11158.
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