期刊论文详细信息
Biological Procedures Online
A robust dual reporter system to visualize and quantify gene expression mediated by transcription activator-like effectors
Claudia Uhde-Stone2  Joseph Huang1  Biao Lu1 
[1] System Biosciences (SBI), 265 North Whisman Road, Mountain View CA 94043, USA
[2] Departments of Biological Sciences, California State University, East Bay, Hayward CA 94542, USA
关键词: Firefly luciferase;    Green fluorescent protein;    Transcription activator-like effector;    Gene editing;    Dual reporter;   
Others  :  793191
DOI  :  10.1186/1480-9222-14-8
 received in 2012-07-20, accepted in 2012-07-22,  发布年份 2012
PDF
【 摘 要 】

Background

Transcription activator-like effectors (TALEs) are a class of naturally occurring transcription effectors that recognize specific DNA sequences and modulate gene expression. The modularity of TALEs DNA binding domain enables sequence-specific perturbation and offers broad applications in genetic and epigenetic studies. Although the efficient construction of TALEs has been established, robust functional tools to assess their functions remain lacking.

Results

We established a dual reporter system that was specifically designed for real-time monitoring and quantifying gene expression mediated by TALEs. We validated both sensitivity and specificity of this dual-reporter system in mammalian cells, and demonstrated that this dual reporter system is robust and potentially amenable to high throughput (HTP) applications.

Conclusion

We have designed, constructed and validated a novel dual reporter system for assessing TALE mediated gene regulations. This system offers a robust and easy-to- use tool for real-time monitoring and quantifying gene expression in mammalian cells.

【 授权许可】

   
2012 Uhde-Stone et al.; licensee BioMed Central Ltd.

【 预 览 】
附件列表
Files Size Format View
20140705044637679.pdf 1689KB PDF download
Figure 4. 61KB Image download
Figure 3. 102KB Image download
Figure 2. 169KB Image download
Figure 1. 145KB Image download
【 图 表 】

Figure 1.

Figure 2.

Figure 3.

Figure 4.

【 参考文献 】
  • [1]Urnov FD, Rebar EJ, Holmes MC, Zhang HS, Gregory PD: Genome editing with engineered zinc finger nucleases. Nature reviews Genetics 2010, 11(9):636-646.
  • [2]Silva G, Poirot L, Galetto R, Smith J, Montoya G, Duchateau P, Paques F: Meganucleases and other tools for targeted genome engineering: perspectives and challenges for gene therapy. Current gene therapy 2011, 11(1):11-27.
  • [3]Morbitzer R, Romer P, Boch J, Lahaye T: Regulation of selected genome loci using de novo-engineered transcription activator-like effector (TALE)-type transcription factors. Proceedings of the National Academy of Sciences of the United States of America 2010, 107(50):21617-21622.
  • [4]Hockemeyer D, Wang H, Kiani S, Lai CS, Gao Q, Cassady JP, Cost GJ, Zhang L, Santiago Y, Miller JC, et al.: Genetic engineering of human pluripotent cells using TALE nucleases. Nature biotechnology 2011, 29(8):731-734.
  • [5]Boch J, Bonas U: Xanthomonas AvrBs3 family-type III effectors: discovery and function. Annual review of phytopathology 2010, 48:419-436.
  • [6]Bogdanove AJ, Schornack S, Lahaye T: TAL effectors: finding plant genes for disease and defense. Curr Opin Plant Biol 2010, 13(4):394-401.
  • [7]Boch J, Scholze H, Schornack S, Landgraf A, Hahn S, Kay S, Lahaye T, Nickstadt A, Bonas U: Breaking the code of DNA binding specificity of TAL-type III effectors. Science 2009, 326(5959):1509-1512.
  • [8]Moscou MJ, Bogdanove AJ: A simple cipher governs DNA recognition by TAL effectors. Science 2009, 326(5959):1501.
  • [9]Cermak T, Doyle EL, Christian M, Wang L, Zhang Y, Schmidt C, Baller JA, Somia NV, Bogdanove AJ, Voytas DF: Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic acids research 2011, 39(12):e82.
  • [10]Garg A, Lohmueller JJ, Silver PA, Armel TZ: Engineering synthetic TAL effectors with orthogonal target sites.  , Nucleic acids research; 2012.
  • [11]Clark KJ, Voytas DF, Ekker SC: A TALE of two nucleases: gene targeting for the masses? Zebrafish 2011, 8(3):147-149.
  • [12]Christian M, Cermak T, Doyle EL, Schmidt C, Zhang F, Hummel A, Bogdanove AJ, Voytas DF: Targeting DNA double-strand breaks with TAL effector nucleases. Genetics 2010, 186(2):757-761.
  • [13]Li T, Huang S, Jiang WZ, Wright D, Spalding MH, Weeks DP, Yang B: TAL nucleases (TALNs): hybrid proteins composed of TAL effectors and FokI DNA-cleavage domain. Nucleic acids research 2011, 39(1):359-372.
  • [14]Miller JC, Tan S, Qiao G, Barlow KA, Wang J, Xia DF, Meng X, Paschon DE, Leung E, Hinkley SJ, et al.: A TALE nuclease architecture for efficient genome editing. Nature biotechnology 2011, 29(2):143-148.
  • [15]Mahfouz MM, Li L, Shamimuzzaman M, Wibowo A, Fang X, Zhu JK: De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks. Proceedings of the National Academy of Sciences of the United States of America 2011, 108(6):2623-2628.
  • [16]Li T, Huang S, Zhao X, Wright DA, Carpenter S, Spalding MH, Weeks DP, Yang B: Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes. Nucleic acids research 2011, 39(14):6315-6325.
  • [17]Li T, Liu B, Spalding MH, Weeks DP, Yang B: High-efficiency TALEN-based gene editing produces disease-resistant rice. Nature biotechnology 2012, 30(5):390-392.
  • [18]Liu J, Li C, Yu Z, Huang P, Wu H, Wei C, Zhu N, Shen Y, Chen Y, Zhang B, et al.: Efficient and Specific Modifications of the Drosophila Genome by Means of an Easy TALEN Strategy. Journal of genetics and genomics = Yi chuan xue bao 2012, 39(5):209-215.
  • [19]Mahfouz MM, Li L: TALE nucleases and next generation GM crops. GM Crops 2011, 2(2):99-103.
  • [20]Moore FE, Reyon D, Sander JD, Martinez SA, Blackburn JS, Khayter C, Ramirez CL, Joung JK, Langenau DM: Improved Somatic Mutagenesis in Zebrafish Using Transcription Activator-Like Effector Nucleases (TALENs). PloS one 2012, 7(5):e37877.
  • [21]Li L, Piatek MJ, Atef A, Piatek A, Wibowo A, Fang X, Sabir JS, Zhu JK, Mahfouz MM: Rapid and highly efficient construction of TALE-based transcriptional regulators and nucleases for genome modification. Plant Mol Biol 2012, 78(4–5):407-416.
  • [22]Mahfouz MM, Li L, Piatek M, Fang X, Mansour H, Bangarusamy DK, Zhu JK: Targeted transcriptional repression using a chimeric TALE-SRDX repressor protein. Plant Mol Biol 2012, 78(3):311-321.
  • [23]Mussolino C, Morbitzer R, Lutge F, Dannemann N, Lahaye T, Cathomen T: A novel TALE nuclease scaffold enables high genome editing activity in combination with low toxicity. Nucleic acids research 2011, 39(21):9283-9293.
  • [24]Zhang F, Cong L, Lodato S, Kosuri S, Church GM, Arlotta P: Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription. Nature biotechnology 2011, 29(2):149-153.
  文献评价指标  
  下载次数:80次 浏览次数:15次