Tricky Topology: Persistence of Folded Human Telomeric i-Motif DNA at Ambient Temperature and Neutral pH

Frontiers in Chemistry

Zoë A. E. Waller¹  Mahmoud A. S. Abdelhamid¹ 

[1] Centre for Molecular and Structural Biochemistry, University of East Anglia, Norwich Research Park, Norwich, United Kingdom;School of Pharmacy, University of East Anglia, Norwich Research Park, Norwich, United Kingdom;

关键词: i-motif;    cytosine;    quadruplex;    DNA;    topology;    kinetics;   

DOI  :  10.3389/fchem.2020.00040

来源: DOAJ

【 摘 要 】

i-Motifs are four-stranded DNA structures formed from sequences rich in cytosine, held together by hemi-protonated cytosine-cytosine base pairs. These structures have been utilized extensively as pH-switches in DNA-based nanotechnology. Recently there has been an increasing interest in i-motif structures in biology, fuelled by examples of when these can form under neutral conditions. Herein we describe a cautionary tale regarding handling of i-motif samples. Using CD and UV spectroscopy we show that it is important to be consistent in annealing i-motif DNA samples as at neutral pH, i-motif unfolding kinetics is dependent on the time allowed for annealing and equilibration. We describe how the quadruplex structure formed by the human telomeric i-motif sequence can be shown to form and persist in the same conditions of neutral pH and ambient temperature in which, once at thermodynamic equilibrium, it exists predominantly as a random coil. This study has implications not only for work with i-motif DNA structures, but also in the uses and applications of these in nanotechnological devices.

【 授权许可】

Unknown