Identification of genes and pathways involved in malignant pleural mesothelioma using bioinformatics methods

BMC Medical Genomics

Yi Zhang¹  Gaojun Lu¹  Xingsheng Liu¹  Peng Chen¹  Kun Qian¹ 

[1] Department of Thoracic Surgery, Xuanwu Hospital, Capital Medical University, 45 Changchun Street, 100053, Beijing, China;

关键词: Microarray;    Gene expression profile;    Cancer;    Differentially expressed genes;    Protein–protein interaction;    Bioinformatics;   

DOI  :  10.1186/s12920-021-00954-7

来源: Springer

【 摘 要 】

BackgroundMalignant pleural mesothelioma (MPM) is a rare tumor in the pleura. This study was carried out to identify key genes and pathways that may be involved in MPM.MethodsMicroarray datasets GSE51024 and GSE2549 were analyzed for differentially expressed genes (DEGs) between normal and MPM tissues. The identified DEGs were subjected to functional analyses using bioinformatics tools.ResultsA total of 276 DEGs were identified, consisting of 187 downregulated and 79 upregulated genes. Gene ontology and Kyoto encyclopedia of genes and genomes pathway enrichment analysis indicated that the DEGs were enriched in extracellular structure organization, extracellular matrix, and ECM−receptor interaction. Due to high degree of connectivity among 24 hub genes, EZH2 and HMMR are likely to play roles in the carcinogenesis and progression of MPM. The two genes were found over-expressed in MPM tissues. Patients with elevated EZH2 and HMMR expressions had poor overall survival.ConclusionsEZH2 and HMMR are identified to be the hub genes for MPM and they may be further characterized to better understand the molecular mechanisms underlying the carcinogenesis of MPM.

【 授权许可】

CC BY