Comprehensive transcriptome resource for response to phytohormone-induced signaling in Capsicum annuum L.

BMC Research Notes

Hakgi Jang¹  Nayoung Kim¹  Junesung Lee¹  Seon-In Yeom²  Yong-Min Kim³  Jae-Young Nam⁴  Won-Hee Kang⁴ 

[1] Department of Agricultural Plant Science, Division of Applied Life Science (BK21), Gyeongsang National University, 52828, Jinju, Republic of Korea;Department of Agricultural Plant Science, Division of Applied Life Science (BK21), Gyeongsang National University, 52828, Jinju, Republic of Korea;Institute of Agriculture & Life Science, Gyeongsang National University, 52828, Jinju, Republic of Korea;Genome Engineering Research Center, Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, 34141, Daejeon, Republic of Korea;Institute of Agriculture & Life Science, Gyeongsang National University, 52828, Jinju, Republic of Korea;

关键词: Transcriptome;    Phytohormone signaling;    Environmental stresses;    Capsicum annuum;   

DOI  :  10.1186/s13104-020-05281-1

来源: Springer

【 摘 要 】

ObjectivesPhytohormones are small signaling molecules with crucial roles in plant growth, development, and environmental adaptation to biotic and abiotic stress responses. Despite several previously published molecular studies focused on plant hormones, our understanding of the transcriptome induced by phytohormones remains unclear, especially in major crops. Here, we aimed to provide transcriptome dataset using RNA sequencing for phytohormone-induced signaling in plant.Data descriptionWe used high-throughput RNA sequencing profiling to investigate the pepper plant response to treatment with four major phytohormones (salicylic acid, jasmonic acid, ethylene, and abscisic acid). This dataset yielded 78 samples containing three biological replicates per six different time points for each treatment and the control, constituting 187.8 Gb of transcriptome data (2.4 Gb of each sample). This comprehensive parallel transcriptome data provides valuable information for understanding the relationships and molecular networks that regulate the expression of phytohormone-related genes involved in plant developments and environmental stress adaptation.

【 授权许可】

CC BY