期刊论文详细信息
Retrovirology
Modulation of HIV-1 Gag NC/p1 cleavage efficiency affects protease inhibitor resistance and viral replicative capacity
Monique Nijhuis3  Charles AB Boucher2  Dorien de Jong3  Pauline J Schipper3  Axel Fun3  Martin Lepšík1  Dan Andersson1  Noortje M van Maarseveen3 
[1] Gilead Sciences and IOCB Research Center Prague, Institute of Organic Chemistry and Biochemistry, v.v.i., Academy of Science of the Czech Republic, Flemingovo n.2, 166 10 Praha 6, Czech Republic;Dept. of Virology, Erasmus Medical Center, Dr. Molewaterplein 50, 3015 GE Rotterdam, the Netherlands;Dept. of Medical Microbiology, Virology, University Medical Center Utrecht, Heidelberglaan 100 (HP G04.614), 3584 CX Utrecht, the Netherlands
关键词: NC/p1;    Replicative capacity;    Cleavage;    Gag;    Resistance;    Protease;    HIV-1;   
Others  :  1209316
DOI  :  10.1186/1742-4690-9-29
 received in 2011-10-21, accepted in 2012-04-01,  发布年份 2012
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【 摘 要 】

Background

Mutations in the substrate of HIV-1 protease, especially changes in the NC/p1 cleavage site, can directly contribute to protease inhibitor (PI) resistance and also compensate for defects in viral replicative capacity (RC) due to a drug resistant protease. These NC/p1 changes are known to enhance processing of the Gag protein. To investigate the capacity of HIV-1 to modulate Gag cleavage and its consequences for PI resistance and RC, we performed a detailed enzymatic and virological analysis using a set of PI resistant NC/p1 variants (HXB2431V, HXB2436E+437T, HXB2437T and HXB2437V).

Results

Here, we demonstrate that single NC/p1 mutants, which displayed only a slight increase in PI resistance did not show an obvious change in RC. In contrast, the double NC/p1 mutant, which displayed a clear increase in processing efficiency and PI resistance, demonstrated a clear reduction in RC. Cleavage analysis showed that a tridecameric NC/p1 peptide representing the double NC/p1 mutant was cleaved in two specific ways instead of one.

The observed decrease in RC for the double NC/p1 mutant (HXB2436E+437T) could (partially) be restored by either reversion of the 436E change or by acquisition of additional changes in the NC/p1 cleavage site at codon 435 or 438 as was revealed during in vitro evolution experiments. These changes not only restored RC but also reduced PI resistance levels. Furthermore these changes normalized Gag processing efficiency and obstructed the novel secondary cleavage site observed for the double NC/p1 mutant.

Conclusions

The results of this study clearly demonstrate that HIV-1 can modulate Gag processing and thereby PI resistance. Distinct increases in Gag cleavage and PI resistance result in a reduced RC that can only be restored by amino acid changes in NC/p1 which reduce Gag processing to an optimal rate.

【 授权许可】

   
2012 van Maarseveen et al; licensee BioMed Central Ltd.

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【 参考文献 】
  • [1]Condra JH, Schleif WA, Blahy OM, Gabryelski LJ, Graham DJ, Quintero JC, Rhodes A, Robbins HL, Roth E, Shivaprakash M, et al.: In vivo emergence of HIV-1 variants resistant to multiple protease inhibitors. Nature 1995, 374:569-571.
  • [2]Kaplan AH, Michael SF, Wehbie RS, Knigge MF, Paul DA, Everitt L, Kempf DJ, Norbeck DW, Erickson JW, Swanstrom R: Selection of multiple human immunodeficiency virus type 1 variants that encode viral proteases with decreased sensitivity to an inhibitor of the viral protease. Proc Natl Acad Sci USA 1994, 91:5597-5601.
  • [3]Molla A, Korneyeva M, Gao Q, Vasavanonda S, Schipper PJ, Mo HM, Markowitz M, Chernyavskiy T, Niu P, Lyons N, et al.: Ordered accumulation of mutations in HIV protease confers resistance to ritonavir. Nat Med 1996, 2:760-766.
  • [4]Swanstrom R, Erona J: Human immunodeficiency virus type-1 protease inhibitors: therapeutic successes and failures, suppression and resistance. Pharmacol Ther 2000, 86:145-170.
  • [5]Croteau G, Doyon L, Thibeault D, McKercher G, Pilote L, Lamarre D: Impaired fitness of HIV-1 variants with high-level resistance to protease inhibitors. J Virol 1997, 71:1089-1096.
  • [6]Gulnik S, Suvorov LI, Liu B, Yu B, Anderson B, Mitsuya H, Erickson JW: Kinetic characterization and cross-resistance patterns of HIV-1 protease mutants selected under drug pressure. Biochem 1995, 34:9282-9287.
  • [7]Mahalingam B, Louis JM, Reed CC, Adomat JM, Krouse J, Wang YF, Harrison RW, Weber IT: Structural and kinetic analysis of drug resistant mutants of HIV-1 protease. Eur J Biochem 1999, 263:238-245.
  • [8]Quinones-Mateu ME, Arts EJ: HIV-1 Fitness:Implications for drug resistance, disease progression an global epidemic evolution. In HIV sequence compendium 2001. Edited by Kuiken C, Foley B, Hahn B, Marx PA, McCutchan F, Mellors J. Theoretical Biology and Biophysics Group, Los Alamos National Laboratory; 2001.
  • [9]Borman AM, Paulos S, Clavel F: Resistance of human immunodeficiency virus type 1 to protease inhibitors: selection of resistance mutations in the presence and absence of the drug. J Gen Virol 1996, 77:419-426.
  • [10]Doyon L, Croteau G, Thibeault D, Poulin F, Pilote L, Lamarre D: Second locus involved in human immunodeficiency virus type 1 resistance to protease inhibitors. J Virol 1996, 70:3763-3769.
  • [11]Maguire MF, Guinea R, Griffin P, Macmanus S, Elston RC, Wolfram J, Richards N, Hanlon MH, Porter DJ, Wrin T, et al.: Changes in human immunodeficiency virus type 1 Gag at positions L449 and P453 are linked to I50V protease mutants in vivo and cause reduction of sensitivity to amprenavir and improved viral fitness in vitro. J Virol 2002, 76:7398-7406.
  • [12]Mammano F, Petit C, Clavel F: Resistance-associated loss of viral fitness in human immunodeficiency virus type 1: phenotypic analysis of protease and gag coevolution in protease inhibitor-treated patients. J Virol 1998, 72:7632-7637.
  • [13]Mammano F, Trouplin V, Zennou V, Clavel F: Retracing the evolutionary pathways of human immunodeficiency virus type 1 resistance to protease inhibitors: Virus fitness in the absence and in the presence of drug. J Virol 2000, 74:8524-8531.
  • [14]Nijhuis M, Schuurman R, de Jong D, Erickson J, Gustchina E, Albert J, Schipper P, Gulnik S, Boucher CAB: Increased fitness of drug resistant HIV-1 protease as a result of acquisition of compensatory mutations during suboptimal therapy. AIDS 1999, 13:2349-2359.
  • [15]Zhang Y-M, Imamichi H, Imamichi T, Lane HC, Falloon J, Vasudevachari MB, Salzman NP: Drug Resistance during Indinavir Therapy Is Caused by Mutations in the Protease Gene and in Its Gag Substrate Cleavage Sites. J Virol 1997, 71:6662-6670.
  • [16]Kolli M, Lastere S, Schiffer CA: Co-evolution of nelfinavir-resistant HIV-1 protease and the p1-p6 substrate. Virol 2006, 347:405-409.
  • [17]Kolli M, Stawiski E, Chappey C, Schiffer CA: Human immunodeficiency virus type 1 protease-correlated cleavage site mutations enhance inhibitor resistance. J Virol 2009, 83:11027-11042.
  • [18]Nijhuis M, van Maarseveen NM, Lastere S, Schipper P, Coakley E, Glass B, Rovenska M, de JD, Chappey C, Goedegebuure IW, et al.: A novel substrate-based HIV-1 protease inhibitor drug resistance mechanism. PLoS Med 2007, 4:e36.
  • [19]De Meyer S, Azijn H, Fransen E, De Baere I, Van Ginderen M, Maes B, de Bethune MP: The pathway leading to TMC114 resistance is different for TMC114 compared with other protease inhibitors. Antivir Ther 2006, 11:S24.
  • [20]Nijhuis M, van Maarseveen NM, Verheyen J, Boucher CAB: Novel mechanisms of HIV protease inhibitor resistance. Current Opinion in HIV and AIDS 2008, 3:627-632.
  • [21]Dam E, Quercia R, Glass B, Descamps D, Launay O, Duval X, Krausslich HG, Hance AJ, Clavel F: Gag mutations strongly contribute to HIV-1 resistance to protease inhibitors in highly drug-experienced patients besides compensating for fitness loss. PLoS Pathog 2009, 5:e1000345.
  • [22]Cote HC, Brumme ZL, Harrigan PR: Human immunodeficiency virus type 1 protease cleavage site mutations associated with protease inhibitor cross-resistance selected by indinavir, ritonavir, and/or saquinavir. J Virol 2001, 75:589-594.
  • [23]Verheyen J, Knops E, Kupfer B, Hamouda O, Somogyi S, Schuldenzucker U, Hoffmann D, Kaiser R, Pfister H, Kucherer C: Prevalence of C-terminal gag cleavage site mutations in HIV from therapy-naive patients. J Infect 2009, 58:61-67.
  • [24]Ghosn J, Delaugerre C, Flandre P, Galimand J, Cohen-Codar I, Raffi F, Delfraissy JF, Rouzioux C, Chaix ML: Polymorphism in Gag gene cleavage sites of HIV-1 non-B subtype and virological outcome of a first-line lopinavir/ritonavir single drug regimen. PLoS One 2011, 6:e24798.
  • [25]Pettit SC, Moody MD, Wehbie RS, Kaplan AH, Nantermet PV, Klein CA, Swanstrom R: The p2 domain of human immunodeficiency virus type 1 Gag regulates sequential proteolytic processing and is required to produce fully infectious virions. J Virol 1994, 68:8017-8027.
  • [26]Prabu-Jeyabalan M, Nalivaika EA, King NM, Schiffer CA: Structural basis for coevolution of a human immunodeficiency virus type 1 nucleocapsid-p1 cleavage site with a V82A drug-resistant mutation in viral protease. J Virol 2004, 78:12446-12454.
  • [27]Pettit SC, Henderson GJ, Schiffer CA, Swanstrom R: Replacement of the P1 amino acid of human immunodeficiency virus type 1 Gag processing sites can inhibit or enhance the rate of cleavage by the viral protease. J Virol 2002, 76:10226-10233.
  • [28]van Maarseveen NM, de JD, Boucher CA, Nijhuis M: An increase in viral replicative capacity drives the evolution of protease inhibitor-resistant human immunodeficiency virus type 1 in the absence of drugs. J Acquir Immune Defic Syndr 2006, 42:162-168.
  • [29]Prabu-Jeyabalan M, Nalivaika EA, Romano K, Schiffer CA: Mechanism of substrate recognition by drug-resistant human immunodeficiency virus type 1 protease variants revealed by a novel structural intermediate. J Virol 2006, 80:3607-3616.
  • [30]Feher A, Weber IT, Bagossi P, Boross P, Mahalingam B, Louis JM, Copeland TD, Torshin IY, Harrison RW, Tozser J: Effect of sequence polymorphism and drug resistance on two HIV-1 Gag processing sites. Eur J Biochem 2002, 269:4114-4120.
  • [31]van Maarseveen NM, Huigen MCDG, de Jong D, Smits AM, Boucher CAB, Nijhuis M: A novel real-time PCR assay to determine relative replication capacity for HIV-1 protease variants and/or reverse transcriptase variants. J Virol Methods 2006, 133:185-194.
  • [32]Moore JP, McKeating JA, Weiss RA, Sattentau QJ: Dissociation of gp120 from HIV-1 virions induced by soluble CD4. Science 1990, 250:1139-1142.
  • [33]Boucher CAB, Keulen W, van Bommel T, Nijhuis M, de Jong D, de Jong MD, Schipper P, Back NKT: Human immunodeficiency virus type 1 drug susceptibility determination by using recombinant viruses generated from patient sera tested in a cell-killing assay. Antim Ag Chemoth 1996, 40:2404-2409.
  • [34]Weber J, Mesters JR, Lepsik M, Prejdova J, Svec M, Sponarova J, Mlcochova P, Skalicka K, Strisovsky K, Uhlikova T, et al.: Unusual binding mode of an HIV-1 protease inhibitor explains its potency against multi-drug-resistant virus strains. J Mol Biol 2002, 324:739-754.
  • [35]Konvalinka J, Litera J, Weber J, Vondrasek J, Hradilek M, Soucek M, Pichova I, Majer P, Strop P, Sedlacek J, et al.: Configurations of diastereomeric hydroxyethylene isosteres strongly affect biological activities of a series of specific inhibitors of human-immunodeficiency-virus proteinase. Eur J Biochem 1997, 250:559-566.
  • [36]Strisovsky K, Tessmer U, Langner J, Konvalinka J, Krausslich HG: Systematic mutational analysis of the active-site threonine of HIV-1 proteinase: rethinking the "fireman's grip" hypothesis. Protein Sci 2000, 9:1631-1641.
  • [37]Massova I, Kollman PA: Combined molecular mechanical and continuum solvent approach (MM-PBSA/GBSA) to predict ligand binding. Perspect Drug Discovery Des 2000, 18:113-135.
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