期刊论文详细信息
Cell Division
Proteolysis of Xenopus Cip-type CDK inhibitor, p16Xic2, is regulated by PCNA binding and CDK2 phosphorylation
P Renee Yew4  Paul R Mueller6  Herbert B Rosenbaum3  Varija N Budhavarapu1  Horng-Ru Lin5  Dong Hyun Kim4  Xi-Ning Zhu2 
[1] Current address: MD Anderson Cancer, Department of Biochemistry and Molecular Biology, University of Texas, Houston, TX, 77030, USA;Current address: DiaCarta Inc., P.O. Box 360772, Milpitas, CA, 95036, USA;Department of Molecular Medicine, Institute of Biotechnology, The University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA;Department of Molecular Medicine, Institute of Biotechnology, Mail Code 8257, South Texas Research Facility, The University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229-3900, USA;Current address: Department of Infectious Diseases, Novartis Institute for Biomedical Research, 4560 Horton Street MS 4.3, Emeryville, CA, 94608-2916, USA;Department of Biology, The University of Texas at San Antonio, San Antonio, TX, 78249, USA
关键词: CDK inhibitor;    Proteolysis;    Phosphorylation;    PCNA;    Xenopus;    Xic2;   
Others  :  790797
DOI  :  10.1186/1747-1028-8-5
 received in 2013-01-25, accepted in 2013-04-17,  发布年份 2013
PDF
【 摘 要 】

Background

Cell division is positively regulated by cyclin-dependent kinases (CDKs) partnered with cyclins and negatively regulated by CDK inhibitors. In the frog, Xenopus laevis, three types of CDK inhibitors have been described: p27Xic1 (Xic1) which shares sequence homology with both p21Cip1 and p27Kip1 from mammals, p16Xic2 (Xic2) which shares sequence homology with p21Cip1, and p17Xic3 (Xic3) which shares sequence homology with p27Kip1. While past studies have demonstrated that during DNA polymerase switching, Xic1 is targeted for protein turnover dependent upon DNA, Proliferating Cell Nuclear Antigen (PCNA), and the ubiquitin ligase CRL4Cdt2, little is known about the processes that regulate Xic2 or Xic3.

Methods

We used the Xenopus interphase egg extract as a model system to examine the regulation of Xic2 by proteolysis and phosphorylation.

Results

Our studies indicated that following primer synthesis during the initiation of DNA replication, Xic2 is targeted for DNA- and PCNA-dependent ubiquitin-mediated proteolysis and that Cdt2 can promote Xic2 turnover. Additionally, during interphase, Xic2 is phosphorylated by CDK2 at Ser-98 and Ser-131 in a DNA-independent manner, inhibiting Xic2 turnover. In the presence of double-stranded DNA ends, Xic2 is also phosphorylated at Ser-78 and Ser-81 by a caffeine-sensitive kinase, but this phosphorylation does not alter Xic2 turnover. Conversely, in the presence or absence of DNA, Xic3 was stable in the Xenopus interphase egg extract and did not exhibit a shift indicative of phosphorylation.

Conclusions

During interphase, Xic2 is targeted for DNA- and PCNA-dependent proteolysis that is negatively regulated by CDK2 phosphorylation. During a response to DNA damage, Xic2 may be alternatively regulated by phosphorylation by a caffeine-sensitive kinase. Our studies suggest that the three types of Xenopus CDK inhibitors, Xic1, Xic2, and Xic3 appear to be uniquely regulated which may reflect their specialized roles during cell division or early development in the frog.

【 授权许可】

   
2013 Zhu et al.; licensee BioMed Central Ltd.

【 预 览 】
附件列表
Files Size Format View
20140705003742311.pdf 2279KB PDF download
Figure 7. 70KB Image download
Figure 6. 46KB Image download
Figure 5. 79KB Image download
Figure 4. 102KB Image download
Figure 3. 58KB Image download
Figure 2. 39KB Image download
Figure 1. 69KB Image download
【 图 表 】

Figure 1.

Figure 2.

Figure 3.

Figure 4.

Figure 5.

Figure 6.

Figure 7.

【 参考文献 】
  • [1]Morgan DO: Principles of CDK regulation. Nature 1995, 374:131-134.
  • [2]Sherr CJ, Roberts JM: Inhibitors of mammalian G1 cyclin-dependent kinases. Genes Dev 1995, 9:1149-1163.
  • [3]Waga S, Hannon GJ, Beach D, Stillman B: The p21 inhibitor of cyclin-dependent kinases controls DNA replication by interaction with PCNA [see comments]. Nature 1994, 369:574-578.
  • [4]Tsvetkov LM, Yeh KH, Lee SJ, Sun H, Zhang H: p27(Kip1) ubiquitination and degradation is regulated by the SCF(Skp2) complex through phosphorylated Thr187 in p27. Curr Biol 1999, 9:661-664.
  • [5]Bornstein G, Bloom J, Sitry-Shevah D, Nakayama K, Pagano M, Hershko A: Role of the SCFSkp2 ubiquitin ligase in the degradation of p21Cip1 in S phase. J Biol Chem 2003, 278:25752-25757.
  • [6]Kamura T, Hara T, Kotoshiba S, Yada M, Ishida N, Imaki H, Hatakeyama S, Nakayama K, Nakayama KI: Degradation of p57Kip2 mediated by SCFSkp2-dependent ubiquitylation. Proc Natl Acad Sci U S A 2003, 100:10231-10236.
  • [7]Sutterluty H, Chatelain E, Marti A, Wirbelauer C, Senften M, Muller U, Krek W: p45SKP2 promotes p27Kip1 degradation and induces S phase in quiescent cells. Nat Cell Biol 1999, 1:207-214.
  • [8]Carrano AC, Eytan E, Hershko A, Pagano M: SKP2 is required for ubiquitin-mediated degradation of the CDK inhibitor p27. Nat Cell Biol 1999, 1:193-199.
  • [9]Su JY, Rempel RE, Erikson E, Maller JL: Cloning and characterization of the Xenopus cyclin-dependent kinase inhibitor p27XIC1. Proc Natl Acad Sci U S A 1995, 92:10187-10191.
  • [10]Shou W, Dunphy WG: Cell cycle control by Xenopus p28Kix1, a developmentally regulated inhibitor of cyclin-dependent kinases. Mol Biol Cell 1996, 7:457-469.
  • [11]Daniels M, Dhokia V, Richard-Parpaillon L, Ohnuma S: Identification of Xenopus cyclin-dependent kinase inhibitors, p16Xic2 and p17Xic3. Gene 2004, 342:41-47.
  • [12]Ohnuma S, Philpott A, Wang K, Holt CE, Harris WA: p27Xic1, a Cdk inhibitor, promotes the determination of glial cells in Xenopus retina. Cell 1999, 99:499-510.
  • [13]Philpott A, Yew PR: The Xenopus cell cycle: an overview. Mol Biotechnol 2008, 39:9-19.
  • [14]Vernon AE, Devine C, Philpott A: The cdk inhibitor p27Xic1 is required for differentiation of primary neurones in Xenopus. Development 2003, 130:85-92.
  • [15]Vernon AE, Movassagh M, Horan I, Wise H, Ohnuma S, Philpott A: Notch targets the Cdk inhibitor Xic1 to regulate differentiation but not the cell cycle in neurons. EMBO Rep 2006, 7:643-648.
  • [16]Vernon AE, Philpott A: A single cdk inhibitor, p27Xic1, functions beyond cell cycle regulation to promote muscle differentiation in Xenopus. Development 2003, 130:71-83.
  • [17]Carruthers S, Mason J, Papalopulu N: Depletion of the cell-cycle inhibitor p27(Xic1) impairs neuronal differentiation and increases the number of ElrC(+) progenitor cells in Xenopus tropicalis. Mech Dev 2003, 120:607-616.
  • [18]Hardcastle Z, Papalopulu N: Distinct effects of XBF-1 in regulating the cell cycle inhibitor p27(XIC1) and imparting a neural fate. Development 2000, 127:1303-1314.
  • [19]Yew PR, Kirschner MW: Proteolysis and DNA replication: the CDC34 requirement in the Xenopus egg cell cycle. Science 1997, 277:1672-1676.
  • [20]Kim DH, Budhavarapu VN, Herrera CR, Nam HW, Kim YS, Yew PR: The CRL4Cdt2 ubiquitin ligase mediates the proteolysis of cyclin-dependent kinase inhibitor Xic1 through a direct association with PCNA. Mol Cell Biol 2010, 30:4120-4133.
  • [21]Chuang LC, Yew PR: Proliferating cell nuclear antigen recruits cyclin-dependent kinase inhibitor Xic1 to DNA and couples its proteolysis to DNA polymerase switching. J Biol Chem 2005, 280:35299-35309.
  • [22]Chuang LC, Zhu XN, Herrera CR, Tseng HM, Pfleger CM, Block K, Yew PR: The C-terminal domain of the Xenopus cyclin-dependent kinase inhibitor, p27Xic1, is both necessary and sufficient for phosphorylation-independent proteolysis. J Biol Chem 2005, 280:35290-35298.
  • [23]Chuang LC, Yew PR: Regulation of nuclear transport and degradation of the xenopus cyclin-dependent Kinase inhibitor, p27Xic1. J Biol Chem 2001, 276:1610-1617.
  • [24]Lin HR, Chuang LC, Boix-Perales H, Philpott A, Yew PR: Ubiquitination of cyclin-dependent kinase inhibitor, Xic1, is mediated by the Xenopus F-box protein xSkp2. Cell Cycle 2006, 5:304-314.
  • [25]Hershko A, Heller H: Occurrence of a polyubiquitin structure in ubiquitin-protein conjugates. Biochem Biophys Res Commun 1985, 128:1079-1086.
  • [26]El-Deiry WS, Harper JW, O’Connor PM, Velculescu VE, Canman CE, Jackman J, Pietenpol JA, Burrell M, Hill DE, Wang Y: WAF1/CIP1 is induced in p53-mediated G1 arrest and apoptosis. Cancer Res 1994, 54:1169-1174.
  • [27]Gulbis JM, Kelman Z, Hurwitz J, O’Donnell M, Kuriyan J: Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA. Cell 1996, 87:297-306.
  • [28]Warbrick E, Lane DP, Glover DM, Cox LS: A small peptide inhibitor of DNA replication defines the site of interaction between the cyclin-dependent kinase inhibitor p21WAF1 and proliferating cell nuclear antigen. Curr Biol 1995, 5:275-282.
  • [29]Havens CG, Walter JC: Mechanism of CRL4Cdt2, a PCNA-dependent E3 ubiquitin ligase. Genes Dev 2011, 25:1568-1582.
  • [30]Abbas T, Dutta A: CRL4Cdt2: master coordinator of cell cycle progression and genome stability. Cell Cycle 2011, 10:241-249.
  • [31]Jackson PK, Chevalier S, Philippe M, Kirschner MW: Early events in DNA replication require cyclin E and are blocked by p21CIP1. J Cell Biol 1995, 130:755-769.
  • [32]Guo Z, Dunphy WG: Response of Xenopus Cds1 in cell-free extracts to DNA templates with double-stranded ends. Mol Biol Cell 2000, 11:1535-1546.
  • [33]Kornbluth S, Smythe C, Newport JW: In vitro cell cycle arrest induced by using artificial DNA templates. Mol Cell Biol 1992, 12:3216-3223.
  • [34]Finkielstein CV, Lewellyn AL, Maller JL: The midblastula transition in Xenopus embryos activates multiple pathways to prevent apoptosis in response to DNA damage. Proc Natl Acad Sci U S A 2001, 98:1006-1011.
  • [35]Havens CG, Walter JC: Docking of a specialized PIP Box onto chromatin-bound PCNA creates a degron for the ubiquitin ligase CRL4Cdt2. Mol Cell 2009, 35:93-104.
  • [36]Wei W, Ayad NG, Wan Y, Zhang GJ, Kirschner MW, Kaelin WG Jr: Degradation of the SCF component Skp2 in cell-cycle phase G1 by the anaphase-promoting complex. Nature 2004, 428:194-198.
  • [37]Smythe C, Newport JW: Systems for the study of nuclear assembly, DNA replication, and nuclear breakdown in Xenopus laevis egg extracts. Methods Cell Biol 1991, 35:449-468.
  • [38]Abbas T, Sivaprasad U, Terai K, Amador V, Pagano M, Dutta A: PCNA-dependent regulation of p21 ubiquitylation and degradation via the CRL4Cdt2 ubiquitin ligase complex. Genes Dev 2008, 22:2496-2506.
  • [39]Kim Y, Starostina NG, Kipreos ET: The CRL4Cdt2 ubiquitin ligase targets the degradation of p21Cip1 to control replication licensing. Genes Dev 2008, 22:2507-2519.
  • [40]Abbas T, Dutta A: p21 in cancer: intricate networks and multiple activities. Nat Rev Cancer 2009, 9:400-414.
  • [41]Blow JJ, Laskey RA: Initiation of DNA replication in nuclei and purified DNA by a cell-free extract of Xenopus eggs. Cell 1986, 47:577-587.
  • [42]Murray AW: Cell cycle extracts. Methods Cell Biol 1991, 36:581-605.
  • [43]McSherry TD, Mueller PR: Xenopus Cds1 is regulated by DNA-dependent protein kinase and ATR during the cell cycle checkpoint response to double-stranded DNA ends. Mol Cell Biol 2004, 24:9968-9985.
  文献评价指标  
  下载次数:92次 浏览次数:12次