Developing a guideline to standardize the citation of bioresources in journal articles (CoBRA)

BMC Medicine

Anne Cambon-Thomsen¹  Anna Maria Rossi²  Federica Napolitani²  Laurence Mabile¹  Paola De Castro²  Alessia Calzolari²  Elena Bravo² 

[1] UMR U 1027, Inserm, Université Toulouse III - Paul Sabatier, 37 allées Jules Guesde F-31000, Toulouse, France;Department of Hematology, Oncology and Molecular Medicine, Istituto Superiore di Sanità, Viale Regina Elena 299, Rome, 00161, Italy

关键词: Traceability;    Standardized citation;    Repository;    Open policies;    Guideline;    Data sharing;    CoBRA;    Bioresource Research Impact Factor;    Bioresource;    Biobanks;   

Others  :  1125890
DOI  :  10.1186/s12916-015-0266-y

 received in 2014-06-25, accepted in 2015-01-02,  发布年份 2015

【 摘 要 】

Background

Many biomedical publications refer to data obtained from collections of biosamples. Sharing such bioresources (biological samples, data, and databases) is paramount for the present governance of research. Recognition of the effort involved in generating, maintaining, and sharing high quality bioresources is poorly organized, which does not encourage sharing. At publication level, the recognition of such resources is often neglected and/or highly heterogeneous. This is a true handicap for the traceability of bioresource use. The aim of this article is to propose, for the first time, a guideline for reporting bioresource use in research articles, named CoBRA: Citation of BioResources in journal Articles.

Methods

As standards for citing bioresources are still lacking, the members of the journal editors subgroup of the Bioresource Research Impact Factor (BRIF) initiative developed a standardized and appropriate citation scheme for such resources by informing stakeholders about the subject and raising awareness among scientists and in science editors’ networks, mapping this topic among other relevant initiatives, promoting actions addressed to stakeholders, launching surveys, and organizing focused workshops.

Results

The European Association of Science Editors has adopted BRIF’s suggestion to incorporate statements on biobanks in the Methods section of their guidelines. The BRIF subgroup agreed upon a proposed citation system: each individual bioresource that is used to perform a study and that is mentioned in the Methods section should be cited as an individual “reference [BIORESOURCE]” according to a delineated format. The EQUATOR (Enhancing the QUAlity and Transparency Of health Research) network mentioned the proposed reporting guideline in their “guidelines under development” section.

Conclusions

Evaluating bioresources’ use and impact requires that publications accurately cite such resources. Adopting the standard citation scheme described here will improve the quality of bioresource reporting and will allow their traceability in scientific publications, thus increasing the recognition of bioresources’ value and relevance to research.

Please see related article: http://dx.doi.org/10.1186/s12916-015-0284-9.

【 授权许可】

   
2015 Bravo et al.; licensee BioMed Central.

【 参考文献 】

• [1]Mabile L, Dalgleish R, Thorisson GA, Deschênes M, Hewitt R, Carpenter J, et al.: Quantifying the use of bioresources for promoting their sharing in scientific research. Gigascience 2013, 2:7. BioMed Central Full Text
• [2]Ross JS, Mulvey GK, Hines EM, Nissen SE, Krumholz HM: Trial publication after registration in ClinicalTrials.Gov: a cross-sectional analysis. PLoS Med 2009, 6:e1000144.
• [3]Wellcome Trust. Sharing research data to improve public health: full joint statement by funders of health research. http://www.wellcome.ac.uk/About-us/Policy/Spotlight-issues/Data-sharing/Public-health-and-epidemiology/WTDV030690.htm. (Accessed November 15, 2014).
• [4]European Commission. Horizon 2020. The EU framework program for research and innovation. http://ec.europa.eu/programmes/horizon2020/. (Accessed November 15, 2014).
• [5]Professor Dickersin’s EQUATOR Network lecture. http://www.equator-network.org/2013/09/09/annual-lecture-2013-presented-by-prof-kay-dickersin/. (Accessed November 15, 2014).
• [6]Canadian network for observational drug effect studies. http://www.cnodes.ca/. (Accessed November 15, 2014).
• [7]ICES. http://www.ices.on.ca/ (Accessed November 15, 2014)
• [8]Annals of Internal Medicine. http://annals.org/public/authorsinfo.aspx. (Accessed November 15, 2014).
• [9]Hrynaszkiewicz I, Altman DG: Towards agreement on best practice for publishing raw clinical trial data. Trials 2009, 10:17. BioMed Central Full Text
• [10]Ross JS, Lehman R, Gross CP: The importance of clinical trial data sharing: toward more open science. Circ Cardiovasc Qual Outcomes 2012, 5:238-40.
• [11]Kaufmann F, Cambon-Thomsen A: Tracing biological collections: between books and clinical trials. JAMA 2008, 299:2316-8.
• [12]Cambon-Thomsen A, Gudmundur A, Thorisson GA, Mabile L: for the BRIF workshop group: The role of a bioresource research impact factor as an incentive to share human bioresources. Nat Genet 2011, 43:503-4.
• [13]Simeon-Dubach D, Perren A: Better provenance for biobank samples. Nature 2011, 475:454-5.
• [14]De Castro P, Calzolari A, Napolitani F, Rossi AM, Mabile L, Cambon-Thomsen A, et al.: Open data sharing in the context of bioresources. Acta Inform Med 2013, 21:291-2.
• [15]Ross JS, Krumholz HM: Ushering in a new era of open science through data sharing: the wall must come down. JAMA 2013, 309:1355-6.
• [16]Lin J, Strasser C: Recommendations for the role of publishers in access to data. PLoS Biol 2014, 12:e1001975.
• [17]He S, Ganzinger M, Hurdle JF, Knaup P: Proposal for a data publication and citation framework when sharing biomedical research resources. Stud Health Technol Inform 2013, 192:1201.
• [18]Bravo E, Cambon-Thomsen A, De Castro P, Mabile L, Napolitani F, Napolitano M, et al.: Citation of bioresources in biomedical journals: moving towards standardization for an impact evaluation. European Science Editing 2013, 39:36-8.
• [19]GEN2PHEN. The BRIF initiative. http://www.gen2phen.org/groups/brif-bio-resource-impact-factor. (Accessed November 15, 2014).
• [20]Open Journal of Bioresources. http://openbioresources.metajnl.com/. (Accessed November 15, 2014).
• [21]Public Population Project in Genomics and Society. BRIF BioSHaRE Pilot Study. www.p3g.org/brif-bioshare-pilot-study.
• [22]Bioshare. https://www.bioshare.eu/.
• [23]Moher D, Schulz KF, Simera I, Altman DG: Guidance for developers of health research reporting guidelines. PLoS Med 2010, 7:e1000217.
• [24]International Committee of Medical Journal Editors. http://www.icmje.org. (Accessed November 15, 2014).
• [25]International Committee of Medical Journal Editors. ICMJE Recommendations. http://www.icmje.org/about-icmje/faqs/icmje-recommendations/. (Accessed November 15, 2014).
• [26]EASE Guidelines for Authors and Translators of Scientific Articles to be Published in English. http://www.ease.org.uk/publications/author-guidelines. (Accessed November 15, 2014).
• [27]De Castro P, Napolitani F, Rossi AM, Petrini C, Cambon-Thomsen A, Bravo E: Standardizing citations of research biobanks for a possible evaluation of bioresource research impact factor. 11th EASE General Assembly and Conference. Editing in the Digital World, Tallinn, Estonia; 2012.
• [28]Enhancing the QUAlity and Transparency Of health Research (EQUATOR) network. http://www.equator-network.org/library/reporting-guidelines-under-development/#19. (Accessed November 15, 2014).
• [29]Cambon-Thomsen A, Mabile L, De Castro P, Napolitani F, Rossi AM, Bravo E, et al.: BRIF (Bioresource Research Impact Factor). A tool proposed for tracing and promoting the access and use of bioresources in publications. Fifth Belgrade International Open Access Conference, Belgrade, Serbia; 2012.
• [30]BRIF Editorial Subgroup. Standardizing bioresources citation in journal articles: the editors point of view workshop highlights and action points. Rome meeting report. http://www.equator-network.org/wp-content/uploads/2009/02/BRIF-guidelines-ROME-WORKSHOP-REPORT.pdf. (Accessed November 15, 2014).
• [31]Biopreservation and Biobanking. [http://www.liebertpub.com/bio] (Accessed November 15, 2014).
• [32]CrossRef. [http://www.crossref.org] (Accessed November 15, 2014)
• [33]Cambon-Thomsen A, De Castro P, Napolitani F, Rossi AM, Calzolari A, Mabile L, et al.: Standardizing bioresources citation in scientific publications. International Congress on Peer Review and Biomedical Publication, Chicago, USA; 2013.
• [34]European Commission. Council Regulation (EC) No 723/2009 of 25 June 2009 on the Community legal framework for a European Research Infrastructure Consortium (ERIC). Off J Europ Union L 206/1 EN 8.8.2009. http://ec.europa.eu/research/infrastructures/pdf/council_regulation_eric.pdf.
• [35]Biobanking and Biomolecular resources Research Infrastructure. [http://bbmri-eric.eu/] (Accessed November 15, 2014).
• [36]Calzolari A, Valerio A, Capone F, Napolitano M, Villa M, Pricci F, et al.: The European research infrastructures of the ESFRI Roadmap in biological and medical sciences: status and perspectives. Ann Ist Super Sanita. 2014, 50:178-85.
• [37]Meyer GS, Nelson EC, Pryor DB, James B, Swensen SJ, Kaplan GS, et al.: More quality measures versus measuring what matters: a call for balance and parsimony. BMJ Qual Saf 2012, 21:964-8.
• [38]Moore HM, Kelly AB, Jewell SD, McShane LM, Clark DP, Greenspan R, et al.: Biospecimen reporting for improved study quality (BRISQ). J Proteome Res 2011, 10:3429-38.
• [39]CONSORT – Transparent Reporting of Trials. http://www.consort-statement.org/. (Accessed November 15, 2014).