BMC Medical Genetics | |
The 3′-UTR of the adiponectin Q gene harbours susceptibility loci for atherosclerosis and its metabolic risk traits | |
Nduna Dzimiri2  Maie Alshahid1  Brian F Meyer2  Nada Altassan2  Nejat Mazhar2  Editha Andres2  Daisy Gueco2  Samar Elhawari2  Asma I Tahir2  Mohammed Al-Najai2  Nzioka Muiya2  | |
[1] King Faisal Heart Institute, King Faisal Specialist Hospital and Research Centre, Riyadh 11211, Saudi Arabia;Genetics Department, King Faisal Specialist Hospital and Research Centre, P.O. Box 3354, Riyadh 11211, Saudi Arabia | |
关键词: Atherosclerosis; Metabolic syndrome; Haplotypes; Adiponectin 3′-utranslated region; | |
Others : 1230735 DOI : 10.1186/1471-2350-14-127 |
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received in 2013-11-05, accepted in 2013-11-28, 发布年份 2013 |
【 摘 要 】
Background
Adiponectin Q is a hormone that modulates several metabolic processes and contributes to the suppression of biochemical pathways leading to metabolic syndrome. Hence, polymorphic changes in the adiponectin Q (ADIPOQ) gene are likely to contribute to metabolic disorders, and consequently lead to atherosclerosis. In the present study, we performed a population-based association study for 8 SNPs in 4646 Saudi individuals (2339 CAD cases versus angiographed 2307 controls) by real-time PCR.
Methods
Linkage analysis was done by the Affymetrix Gene Chip array, sequencing by the MegaBACE DNA analysis system and genotyping accomplished by TaqMan chemistry with the Applied Biosystem real-time Prism 7900HT Sequence Detection System.
Results
The rs2241766 (TG + GG) [Odds ratio(95% Confidence Interval = 1.35(1.01-1.72); p = 0.015] and rs9842733A > T [1.48(1.01-2.07); p = 0.042] were associated with hypertension [HTN; 3541 cases vs 1101 controls), following adjustment for the presence of other cardiovascular risk traits. The rs2241766 (TG + GG) was further implicated in harbouring of low high density lipoprotein levels (LHDL; 1353 versus 2156 controls) [1.35(1.10-1.67); p = 0.005], but lost its association with obesity after the adjustment for confounders. Besides, low high density lipoprotein was also linked with rs6444174 (TC + CC) [1.28(1.05-1.59)]. On the other hand, while initial univariate logistic regression analysis pointed to rs1063537 C > T (p = 0.010), rs2082940 C > T (p = 0.035) and rs1063539 G > C (p = 0.035) as being associated with myocardial infarction, significance levels of these relationships were diminished following adjustment for the influence of confounding covariates. Interestingly, haplotyping showed that an 8-mer haplotype GTGCCTCA and several of its derivatives constructed from the studied SNPs were commonly implicated in MI (χ2 = 4.12; p = 0.042), HTN (χ2 = 6.40; p = 0.011) and OBS (χ2 = 5.18; p = 0.023).
Conclusion
These results demonstrate that the ADIPOQ 3′UTR harbours common susceptibility variants for metabolic risk traits and CAD, pointing to the importance of this region in atherosclerosis disease pathways.
【 授权许可】
2013 Muiya et al.; licensee BioMed Central Ltd.
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【 参考文献 】
- [1]Alberti KG, Eckel RH, Grundy SM, Zimmet PZ, Cleeman JI, Donato KA, Fruchart JC, James WP, Loria CM, Smith SC Jr: Harmonizing the metabolic syndrome: a joint interim statement of the international diabetes federation task force on epidemiology and prevention; national heart, lung, and blood institute; american heart association; world heart federation; international atherosclerosis society; and international association for the study of obesity. Circulation 2009, 120(16):1640-1645.
- [2]Vykoukal D, Davies MG: Vascular biology of metabolic syndrome. J Vasc Surg 2011, 54(3):819-831.
- [3]Soodini GR: Adiponectin and leptin in relation to insulin sensitivity. Metab Syndr Relat Disord 2004, 2(2):114-123.
- [4]Siitonen N, Pulkkinen L, Lindstrom J, Kolehmainen M, Eriksson JG, Venojarvi M, Ilanne-Parikka P, Keinanen-Kiukaanniemi S, Tuomilehto J, Uusitupa M: Association of ADIPOQ gene variants with body weight, type 2 diabetes and serum adiponectin concentrations: the finnish diabetes prevention study. BMC Med Genet 2011, 12:5.
- [5]Suriyaprom K, Phonrat B, Namjuntra P, Harnroongroj T, Tungtrongchitr R: The -11377C > G adiponectin gene polymorphism alters the adiponectin concentration and the susceptibility to type 2 diabetes in Thais. Int J Vitam Nutr Res 2010, 80(3):216-224.
- [6]Du J, Ye X, Li Q, Yu X, Cheng J, Ma J, Gao Y, Lu Y, Du W, Shi H, et al.: Genetic variants in the ADIPOQ gene and the risk of metabolic syndrome: a case–control study of a Chinese Han population. Ann Hum Genet 2012, 76(2):101-109.
- [7]Li Y, Li X, Shi L, Yang M, Yang Y, Tao W, Shi L, Xiong Y, Zhang Y, Yao Y: Association of adiponectin SNP + 45 and SNP + 276 with type 2 diabetes in Han Chinese populations: a meta-analysis of 26 case–control studies. PLoS One 2011, 6(5):e19686.
- [8]Boumaiza I, Omezzine A, Rejeb J, Rebhi L, Rejeb NB, Nabli N, Abdelaziz AB, Bouslama A: Association between eight adiponectin polymorphisms, obesity, and metabolic syndrome parameters in Tunisian volunteers. Metab Syndr Relat Disord 2011, 9(6):419-426.
- [9]Boumaiza I, Omezzine A, Rejeb J, Rebhi L, Ben Rejeb N, Nabli N, Ben Abdelaziz A, Boughzala E, Bouslama A: Single-nucleotide polymorphisms at the adiponectin locus and risk of coronary artery disease in Tunisian coronaries. J Cardiovasc Med (Hagerstown) 2011, 12(9):619-624.
- [10]Al-Daghri NM, Alkharfy KM, Alokail MS, Alenad AM, Al-Attas OS, Abdul Khader M, Sabico S, Albagha OM: Assessing the contribution of 38 genetic loci to the risk of type 2 diabetes in the Saudi Arabian population. Clin Endocrinol (Oxf) 2013. doi:10.1111/cen.12187
- [11]Sabouri S, Ghayour-Mobarhan M, Moohebati M, Hassani M, Kassaeian J, Tatari F, Mahmoodi-kordi F, Esmaeili HA, Tavallaie S, Paydar R, et al.: Association between 45 T/G polymorphism of adiponectin gene and coronary artery disease in an Iranian population. ScientificWorldJournal 2011, 11:93-101.
- [12]Cheong MY, Bang OS, Cha MH, Park YK, Kim SH, Kim YJ: Association of the adiponectin gene variations with risk of ischemic stroke in a Korean population. Yonsei Med J 2011, 52(1):20-25.
- [13]Al-Daghri NM, Al-Attas OS, Alokail MS, Alkharfy KM, Hussain T: Adiponectin gene variants and the risk of coronary artery disease in patients with type 2 diabetes. Mol Biol Rep 2012, 493:3703-3708.
- [14]Ling H, Waterworth DM, Stirnadel HA, Pollin TI, Barter PJ, Kesaniemi YA, Mahley RW, McPherson R, Waeber G, Bersot TP, et al.: Genome-wide linkage and association analyses to identify genes influencing adiponectin levels: the GEMS Study. Obesity (Silver Spring) 2009, 17(4):737-744.
- [15]Chiodini BD, Specchia C, Gori F, Barlera S, D’Orazio A, Pietri S, Crociati L, Nicolucci A, Franciosi M, Signorini S, et al.: Adiponectin gene polymorphisms and their effect on the risk of myocardial infarction and type 2 diabetes: an association study in an Italian population. Ther Adv Cardiovasc Dis 2010, 4(4):223-230.
- [16]Zhao T, Zhao J: Genetic effects of adiponectin on blood lipids and blood pressure. Clin Endocrinol (Oxf) 2011, 74(2):214-222.
- [17]Chen JM, Ferec C, Cooper DN: A systematic analysis of disease-associated variants in the 3′ regulatory regions of human protein-coding genes I: general principles and overview. Hum Genet 2006, 120(1):1-21.
- [18]Chen JM, Ferec C, Cooper DN: A systematic analysis of disease-associated variants in the 3′ regulatory regions of human protein-coding genes II: the importance of mRNA secondary structure in assessing the functionality of 3′ UTR variants. Hum Genet 2006, 120(3):301-333.
- [19]Bertoia ML, Waring ME, Gupta PS, Roberts MB, Eaton CB: Implications of new hypertension guidelines in the United States. Hypertension 2007, 58(3):361-366.
- [20]WHO: Obesity and overweight. http://www.who.int/mediacentre/factsheets/fs311/en/#2013 webcite, Fact sheet N°311; Updated March 2013
- [21]Kuzuya T, Nakagawa S, Satoh J, Kanazawa Y, Iwamoto Y, Kobayashi M, Nanjo K, Sasaki A, Seino Y, Ito C, et al.: Report of the committee on the classification and diagnostic criteria of diabetes mellitus. Diabetes Res Clin Pract 2002, 55(1):65-85.
- [22]Mellitus WECoD: WHO expert committee on diabetes mellitus: second report. World Health Organ Tech Rep Ser 1980, 646:1-80.
- [23]Alberti KG, Zimmet PZ: Definition, diagnosis and classification of diabetes mellitus and its complications. Part 1: diagnosis and classification of diabetes mellitus provisional report of a WHO consultation. Diabet Med 1998, 15(7):539-553.
- [24]Teuscher A, Jarrett RJ: Diabetes mellitus: diagnostic criteria. Recommendations of the European Diabetes Epidemiology Study Group (EDESG) concerning the Second Report of the WHO Expert Committee on Diabetes Mellitus. Diabet Med 1984, 1(4):305-307.
- [25]Mellitus ECotDaCoD: Report of the expert committee on the diagnosis and classification of diabetes mellitus. Diabetes Care 2003, 26(Suppl 1):S5-S20.
- [26]Schaid DJ, Rowland CM, Tines DE, Jacobson RM, Poland GA: Score tests for association between traits and haplotypes when linkage phase is ambiguous. Am J Hum Genet 2002, 70(2):425-434.
- [27]Lake SL, Lyon H, Tantisira K, Silverman EK, Weiss ST, Laird NM, Schaid DJ: Estimation and tests of haplotype-environment interaction when linkage phase is ambiguous. Hum Hered 2003, 55(1):56-65.
- [28]Wu Y, Li Y, Lange EM, Croteau-Chonka DC, Kuzawa CW, McDade TW, Qin L, Curocichin G, Borja JB, Lange LA, et al.: Genome-wide association study for adiponectin levels in Filipino women identifies CDH13 and a novel uncommon haplotype at KNG1-ADIPOQ. Hum Mol Genet 2010, 19(24):4955-4964.
- [29]Pischon T, Pai JK, Manson JE, Hu FB, Rexrode KM, Hunter D, Rimm EB: Single nucleotide polymorphisms at the adiponectin locus and risk of coronary heart disease in men and women. Obesity (Silver Spring) 2007, 15(8):2051-2060.
- [30]Tabatabaei-Malazy O, Hasani-Ranjbar S, Amoli MM, Heshmat R, Sajadi M, Derakhshan R, Amiri P, Namakchian M, Rezazadeh E, Tavakkoly-Bazzaz J, et al.: Gender-specific differences in the association of adiponectin gene polymorphisms with body mass index. Rev Diabet Stud 2010, 7(3):241-246.
- [31]Ermolaeva MD: Synonymous codon usage in bacteria. Curr Issues Mol Biol 2001, 3(4):91-97.
- [32]Lynn DJ, Singer GA, Hickey DA: Synonymous codon usage is subject to selection in thermophilic bacteria. Nucleic Acids Res 2002, 30(19):4272-4277.