Metagenomic analysis of Eukaryote diversity in coastal areas of South Korea revealed by Illumina Miseq

Metagenomics;Eukaryote;Illumina Miseq;High-throughput technology;18S rDNA V4;Biodiversity;570

자연과학대학 생명과학부 ;

University:서울대학교 대학원

关键词: Metagenomics;    Eukaryote;    Illumina Miseq;    High-throughput technology;    18S rDNA V4;    Biodiversity;    570;   

Others  :  http://s-space.snu.ac.kr/bitstream/10371/131600/1/000000132445.pdf

美国|英语

来源: Seoul National University Open Repository

【 摘 要 】

Nematoda 100% (6 families), Annelida 31.6% (6 families), Arthropoda 30.8% (4 families), Mollusca 20% (4 families), Platyhelminthes 100% (10 families) compared with integrated three DBs (MABIK, KOMBIS, MRBR). Also, relatedness community structure of eukaryotes and habitat were analyzed by beta-diversity using PCoA (Principle Coordinate Analysis) plot and UPGMA (Unweighted Pair Group Method with Arithmetic mean) tree. As a result, composition of eukaryotes community is likely to be largely affected by the habitat, however, the same habitat not always guarantee the same community structure.