A max-cut approach to heterogeneity in cryo-electron microscopy

JOURNAL OF MATHEMATICAL ANALYSIS AND APPLICATIONS

卷:479

Article

Aizenbud, Yariv¹  Shkolnisky, Yoel¹ 

[1] Tel Aviv Univ, Sch Math Sci, Tel Aviv, Israel

关键词: Cryo-electron microscopy;    Single particle;    Three-dimensional reconstruction;    Heterogeneity;    Classification;    Graph partitioning;   

DOI  :  10.1016/j.jmaa.2019.06.064

来源: Elsevier

【 摘 要 】

The field of cryo-electron microscopy has made astounding advancements in the past few years, mainly due to advancements in electron detectors' technology. Yet, one of the key open challenges of the field remains the processing of heterogeneous data sets, produced from samples containing particles at several different conformational states. For such data sets, the algorithms must include some classification procedure to identify homogeneous groups within the data, so that the images in each group correspond to the same underlying structure. The fundamental importance of the heterogeneity problem in cryo-electron microscopy has drawn many research efforts, and resulted in significant progress in classification algorithms for heterogeneous data sets. While these algorithms are extremely useful and effective in practice, they lack rigorous mathematical analysis and performance guarantees. In this paper, we attempt to make the first steps towards rigorous mathematical analysis of the heterogeneity problem in cryo-electron microscopy. To that end, we present an algorithm for processing heterogeneous data sets, and prove accuracy and stability bounds for it. We also suggest an extension of this algorithm that combines the classification and reconstruction steps. We demonstrate it on simulated data, and compare its performance to the state-of-the-art algorithm in RELION. (C) 2019 Elsevier Inc. All rights reserved.

【 授权许可】

Free