New associations of the genetic polymorphisms in nicotinic receptor genes with the risk of lung cancer

LIFE SCIENCES

卷:91

Article; Proceedings Paper

Chikova, Anna^1,2  Bernard, Hans-Ulrich³  Shchepotin, Igor B.⁴  Grando, Sergei A.^1,5,6 

[1] Univ Calif Irvine, Dept Dermatol, Irvine, CA 92697 USA

[2] Minist Hlth Russian Federat, DI Ivanovsky Inst Virol, Moscow, Russia

[3] Univ Calif Irvine, Dept Mol Biol & Biochem, Irvine, CA 92697 USA

[4] Natl Canc Inst, Kiev, Ukraine

[5] Univ Calif Irvine, Ctr Canc, Irvine, CA 92697 USA

[6] Univ Calif Irvine, Res Inst, Irvine, CA 92697 USA

关键词: Lung cancer;    CHRNA3;    CHRNA9;    alpha 3 and alpha 9 nicotinic acetylcholine receptors;    Single nucleotide polymorphisms;   

DOI  :  10.1016/j.lfs.2011.12.023

来源: Elsevier

【 摘 要 】

Aims: Previous studies revealed association of lung cancer risk with single nucleotide polymorphisms (SNPs) in chromosome 15q25 region containing CHRNA5-CHRNA3-CHRNB4 nicotinic acetylcholine receptor (nAChR) subunit gene cluster. The genetic variations in other lung nAChRs remained unknown. In this study, we perform case-control analysis of CHRNA9 and CHRNA3 genes using 340 non-small cell lung cancer cases and 435 controls. Main methods: All exons, 3'UTR, intron 1 and parts of other introns surrounding exons 2-5 of CHRNA9 gene as well as exons 2, 3 of CHRNA3 gene and parts of surrounding intronic regions were sequenced. The study was controlled for gender, age and ethnicity related differences. Each SNP in analyzed groups was assessed by allele frequency, genotype distribution and haplotype analysis. Key findings: The case-control analysis revealed that an increased risk is associated with two SNPs in CHRNA9, rs56159866 and rs6819385, and one in CHRNA3, rs8040868. The risk was reduced for three SNPs in CHRNA9, rs55998310, rs56291234, and newly discovered rs182073550, and also in carriers of the haplotype NP_060051.2 containing ancestral N442 variant of alpha 9. Significance: The nonsynonymous substitutions can produce receptors exhibiting unique ligand-binding and downstream signaling characteristics, synonymous as well all intronic SNPs may affect protein production at the transcriptional and/or translational levels, or just manifest association with cancer by genetic linkage to other alleles. Elucidation of the mechanisms by which individual genetic variations in alpha 9 affect predisposition to lung cancer may lead to development of personalized approaches to cancer prevention and treatment as well as protection against tobacco consumption. (c) 2012 Elsevier Inc. All rights reserved.

【 授权许可】

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