Exhaled breath condensate metabolome clusters for endotype discovery in asthma

Journal of Translational Medicine

Research

Siddhartha Roy¹  Kunal Aggarwal²  Balaram Ghosh²  Rintu Kutum³  Koundinya Desiraju³  Anurag Agrawal⁴  Anirban Sinha⁵  S. K. Kabra⁶  Rakesh Lodha⁶  Tavpritesh Sethi⁷ 

[1] CSIR-Indian Institute of Chemical Biology, Kolkata, India;Centre of Excellence for Translational Research in Asthma & Lung Disease, CSIR-Institute of Genomics and Integrated Biology, Mall Road, 110007, Delhi, India;Centre of Excellence for Translational Research in Asthma & Lung Disease, CSIR-Institute of Genomics and Integrated Biology, Mall Road, 110007, Delhi, India;Academy of Scientific and Innovative Research (AcSIR), Chennai, India;Centre of Excellence for Translational Research in Asthma & Lung Disease, CSIR-Institute of Genomics and Integrated Biology, Mall Road, 110007, Delhi, India;Academy of Scientific and Innovative Research (AcSIR), Chennai, India;Baylor College of Medicine, Houston, TX, USA;Department of Lung Disease, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands;Department of Pediatrics, All India Institute of Medical Sciences (AIIMS), New Delhi, India;Department of Pediatrics, All India Institute of Medical Sciences (AIIMS), New Delhi, India;Indraprastha Institute of Information Technology Delhi, Delhi, India;

关键词: Asthma;    Endotype;    Exhaled breath condensate;    NMR spectroscopy;    Metabolomics;   

DOI  :  10.1186/s12967-017-1365-7

 received in 2017-07-24, accepted in 2017-12-10,  发布年份 2017

来源: Springer

【 摘 要 】

BackgroundAsthma is a complex, heterogeneous disorder with similar presenting symptoms but with varying underlying pathologies. Exhaled breath condensate (EBC) is a relatively unexplored matrix which reflects the signatures of respiratory epithelium, but is difficult to normalize for dilution.MethodsHere we explored whether internally normalized global NMR spectrum patterns, combined with machine learning, could be useful for diagnostics or endotype discovery. Nuclear magnetic resonance (NMR) spectroscopy of EBC was performed in 89 asthmatic subjects from a prospective cohort and 20 healthy controls. A random forest classifier was built to differentiate between asthmatics and healthy controls. Clustering of the spectra was done using k-means to identify potential endotypes.ResultsNMR spectra of the EBC could differentiate between asthmatics and healthy controls with 80% sensitivity and 75% specificity. Unsupervised clustering within the asthma group resulted in three clusters (n = 41,11, and 9). Cluster 1 patients had lower long-term exacerbation scores, when compared with other two clusters. Cluster 3 patients had lower blood eosinophils and higher neutrophils, when compared with other two clusters with a strong family history of asthma.ConclusionAsthma clusters derived from NMR spectra of EBC show important clinical and chemical differences, suggesting this as a useful tool in asthma endotype-discovery.

【 授权许可】

CC BY   
© The Author(s) 2017