Integration of GWAS, linkage analysis and transcriptome analysis to reveal the genetic basis of flowering time-related traits in maize

Frontiers in Plant Science

Plant Science

Lin Chen¹  Xuefeng Lu²  Angui Wang²  Ying Liu²  Xun Wu²  Liang Tu²  Pengfei Liu²  Xiangyang Guo²  Yunfang Zhu²  Zehui Chen²  Yuan Gao²  Shuang Guo³  Yifei Xiao³  Dong Wang³  Pingfang Xiao³ 

[1] Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China;Institute of Upland Food Crops, Guizhou Academy of Agricultural Sciences, Guiyang, Guizhou, China;Institute of Upland Food Crops, Guizhou Academy of Agricultural Sciences, Guiyang, Guizhou, China;College of Agriculture, Guizhou University, Guiyang, Guizhou, China;

关键词: maize;    genome-wide association study;    flowering time;    RNA-Seq;    candidate gene;   

DOI  :  10.3389/fpls.2023.1145327

 received in 2023-01-16, accepted in 2023-03-10,  发布年份 2023

来源: Frontiers

【 摘 要 】

Maize (Zea mays) inbred lines vary greatly in flowering time, but the genetic basis of this variation is unknown. In this study, three maize flowering-related traits (DTT, days to tasselling; DTP, days to pollen shed; DTS, days to silking) were evaluated with an association panel consisting of 226 maize inbred lines and an F2:3 population with 120 offspring from a cross between the T32 and Qi319 lines in different environments. A total of 82 significant single nucleotide polymorphisms (SNPs) and 117 candidate genes were identified by genome-wide association analysis. Twenty-one quantitative trait loci (QTLs) and 65 candidate genes were found for maize flowering time by linkage analysis with the constructed high-density genetic map. Transcriptome analysis was performed for Qi319, which is an early-maturing inbred line, and T32, which is a late-maturing inbred line, in two different environments. Compared with T32, Qi319 showed upregulation of 3815 genes and downregulation of 3906 genes. By integrating a genome-wide association study (GWAS), linkage analysis and transcriptome analysis, 25 important candidate genes for maize flowering time were identified. Together, our results provide an important resource and a foundation for an enhanced understanding of flowering time in maize.

【 授权许可】

Unknown   
Copyright © 2023 Wu, Liu, Lu, Tu, Gao, Wang, Guo, Xiao, Xiao, Guo, Wang, Liu, Zhu, Chen and Chen