Tracing hepatitis B virus (HBV) genotype B5 (formerly B6) evolutionary history in the circumpolar Arctic through phylogeographic modelling

PeerJ

article

Remco Bouckaert¹  Brenna C. Simons²  Henrik Krarup³  T. Max Friesen⁴  Carla Osiowy⁵ 

[1] Department of Computer Science, University of Auckland;Alaska Native Tribal Health Consortium;Section of Molecular Diagnostics, Clinical Biochemistry, Aalborg University Hospital;Department of Anthropology, University of Toronto;National Microbiology Laboratory, Public Health Agency of Canada;Department of Medical Microbiology and Infectious Diseases, University of Manitoba

关键词: Hepatitis B virus;    Genotype;    Evolution;    Arctic;    Inuit;    Host-pathogen balance;    Adaptation;   

DOI  :  10.7717/peerj.3757

学科分类：社会科学、人文和艺术（综合）

来源: Inra

【 摘 要 】

Background2% prevalence) with hepatitis B virus (HBV), with subgenotype B5 (formerly B6) unique to these populations. The distinctive properties of HBV/B5, including high nucleotide diversity yet no significant liver disease, suggest virus adaptation through long-term host-pathogen association.MethodsTo investigate the origin and evolutionary spread of HBV/B5 into the circumpolar Arctic, fifty-seven partial and full genome sequences from Alaska, Canada and Greenland, having known location and sampling dates spanning 40 years, were phylogeographically investigated by Bayesian analysis (BEAST 2) using a reversible-jump-based substitution model and a clock rate estimated at 4.1 × 10−5 substitutions/site/year.ResultsFollowing an initial divergence from an Asian viral ancestor approximately 1954 years before present (YBP; 95% highest probability density interval [1188, 2901]), HBV/B5 coalescence occurred almost 1000 years later. Surprisingly, the HBV/B5 ancestor appears to locate first to Greenland in a rapid coastal route progression based on the landscape aware geographic model, with subsequent B5 evolution and spread westward. Bayesian skyline plot analysis demonstrated an HBV/B5 population expansion occurring approximately 400 YBP, coinciding with the disruption of the Neo-Eskimo Thule culture into more heterogeneous and regionally distinct Inuit populations throughout the North American Arctic.DiscussionHBV/B5 origin and spread appears to occur coincident with the movement of Neo-Eskimo (Inuit) populations within the past 1000 years, further supporting the hypothesis of HBV/host co-expansion, and illustrating the concept of host-pathogen adaptation and balance.

【 授权许可】

CC BY