Genome-wide identification of MBD gene family members in Eleutherococcus senticosus with their expression motifs under drought stress and DNA demethylation

BMC Genomics

Research

Jing Dong¹  Zhao-Bin Xing¹  Yue-Hong Long¹  Xue-Lei Zhao¹  Xin Song¹  Shuo Wang¹ 

[1] College of Life Sciences, North China University of Science and Technology, Tangshan, China;

关键词: Methyl-binding domain protein;    Eleutherococcus senticosus;    Cis-acting element;    Motif;   

DOI  :  10.1186/s12864-023-09191-x

 received in 2022-08-11, accepted in 2023-02-15,  发布年份 2023

来源: Springer

【 摘 要 】

BackgroundMethyl-binding domain (MBD) is a class of methyl-CpG-binding domain proteins that affects the regulation of gene expression through epigenetic modifications. MBD genes are not only inseparable from DNA methylation but have also been identified and validated in various plants. Although MBD is involved in a group of physiological processes and stress regulation in these plants, MBD genes in Eleutherococcus senticosus remain largely unknown.ResultsTwenty EsMBD genes were identified in E. senticosus. Among the 24 chromosomes of E. senticosus, EsMBD genes were unevenly distributed on 12 chromosomes, and only one tandem repeat gene existed. Collinearity analysis showed that the fragment duplication was the main motif for EsMBD gene expansion. As the species of Araliaceae evolved, MBD genes also evolved and gradually exhibited different functional differentiation. Furthermore, cis-acting element analysis showed that there were numerous cis-acting elements in the EsMBD promoter region, among which light response elements and anaerobic induction elements were dominant. The expression motif analysis revealed that 60% of the EsMBDs were up-regulated in the 30% water content group.ConclusionsBy comparing the transcriptome data of different saponin contents of E. senticosus and integrating them with the outcomes of molecular docking analysis, we hypothesized that EsMBD2 and EsMBD5 jointly affect the secondary metabolic processes of E. senticosus saponins by binding to methylated CpG under conditions of drought stress. The results of this study laid the foundation for subsequent research on the E. senticosus and MBD genes.

【 授权许可】

CC BY   
© The Author(s) 2023

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