The genome of the Black Bengal goat (Capra hircus)

BMC Research Notes

Abdul Baten¹  Michael Stear²  A. K. M. Moniruzzaman Mollah³  Atif Hasan Rahman⁴  Gous Miah⁵  Md. Kabirul Islam Khan⁵  Mohammad Sirazul Islam⁶  Masum Billah⁶  Mohammad Alamgir Hossain⁶  Mohammad Atique Ul Alam⁶  Sourav Saha⁶  Amam Zonaed Siddiki⁶  Mahadia Kumkum⁶  Kazi Shefaul Mulk Shawrob⁶  Muntaha Chowdhury⁶ 

[1] AgResearch;Department of Animal, Plant and Soil Sciences, School of Life Sciences, AgriBio, La Trobe University;Department of Biological Sciences, Asian University for Women (AUW);Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology (BUET);Department of Genetics and Animal Breeding, Faculty of Veterinary Medicine, Chattogram Veterinary and Animal Sciences University (CVASU);Genomics Research Group, Department of Pathology and Parasitology, Faculty of Veterinary Medicine, Chattogram Veterinary and Animal Sciences University (CVASU);

关键词: Black Bengal goat;    Capra hircus;    Whole genome sequencing;    Assembly;    Annotation;   

DOI  :  10.1186/s13104-019-4400-3

来源: DOAJ

【 摘 要 】

Abstract Objectives Black Bengal goat (Capra hircus), a member of the Bovidae family with the unique traits of high prolificacy, skin quality and low demand for food is the most socioeconomically significant goat breed in Bangladesh. Furthermore, the aptitude of adaptation and disease resistance capacity of it is highly notable which makes its whole genome information an area of research interest. Data description The genomic DNA of a local (Chattogram, Bangladesh) healthy male Black Bengal goat (Capra hircus) was extracted and then sequenced. Sequencing was completed using the Illumina HiSeq 2500 sequencing platform and the draft assembly was generated using the “ARS1” genome as the reference. MAKER gene annotation pipeline was utilized to annotate 26,458 gene models. Genome completeness was assessed using BUSCO (Benchmarking Universal Single-Copy Orthologs) which showed 82.5% completeness of the assembled genome.

【 授权许可】

Unknown