Multi-Source Domain Adaptation Techniques for Mitigating Batch Effects: A Comparative Study

Frontiers in Neuroinformatics

Sunil Vasu Kalmady³  Russell Greiner⁴  Rohan Panda⁵ 

[1] Alberta Machine Intelligence Institute, Edmonton, AB, Canada;Canadian VIGOUR Centre, University of Alberta, Edmonton, AB, Canada;Department of Computing Science, University of Alberta, Edmonton, AB, Canada;Department of Psychiatry, University of Alberta, Edmonton, AB, Canada;Electrical and Computer Engineering, Carnegie Mellon University, Pittsburgh, PA, United States;

关键词: resting-state fMRI;    multi-source domain adaptation;    batch effects;    deep learning;    ADHD;    ASD;   

DOI  :  10.3389/fninf.2022.805117

来源: DOAJ

【 摘 要 】

The past decade has seen an increasing number of applications of deep learning (DL) techniques to biomedical fields, especially in neuroimaging-based analysis. Such DL-based methods are generally data-intensive and require a large number of training instances, which might be infeasible to acquire from a single acquisition site, especially for data, such as fMRI scans, due to the time and costs that they demand. We can attempt to address this issue by combining fMRI data from various sites, thereby creating a bigger heterogeneous dataset. Unfortunately, the inherent differences in the combined data, known as batch effects, often hamper learning a model. To mitigate this issue, techniques such as multi-source domain adaptation [Multi-source Domain Adversarial Networks (MSDA)] aim at learning an effective classification function that uses (learned) domain-invariant latent features. This article analyzes and compares the performance of various popular MSDA methods [MDAN, Domain AggRegation Networks (DARN), Multi-Domain Matching Networks (MDMN), and Moment Matching for MSDA (M3SDA)] at predicting different labels (illness, age, and sex) of images from two public rs-fMRI datasets: ABIDE 1and ADHD-200. It also evaluates the impact of various conditions such as class imbalance, the number of sites along with a comparison of the degree of adaptation of each of the methods, thereby presenting the effectiveness of MSDA models in neuroimaging-based applications.

【 授权许可】

Unknown