Environmental factors shaping the diversity of bacterial communities that promote rice production

BMC Microbiology

Zhenyu Li¹  Zhaohui Wu²  Zhaohui Guo³  Qingshu Liu⁴  Jimin Sun⁵  Yongmei Li⁶  Wei Cheng⁷ 

[1] College of Plant Protection, Hunan Agricultural University, Changsha, China;Hunan Hybrid Rice Research Center/State Key Laboratory of Hybrid Rice, Changsha, China;Hunan Institute of Agricultural Information and Engineering, Changsha, China;Hunan Institute of Microbiology, Changsha, China;Hunan Soil and Fertilizer Institute, Changsha, China;LongPing Graduate Institute, Hunan University, Changsha, China;School of Minerals Processing and Bioengineering, Central South University, Changsha, China

关键词: Bacterial diversity;    Bacterial community structure;    Super hybrid rice;    16S rRNA pyrosequencing technology;    Crop yield;    Soil physicochemical properties;   

DOI  :  10.1186/s12866-018-1174-z

学科分类：微生物学和免疫学

来源: BioMed Central

【 摘 要 】

Exploiting soil microorganisms in the rhizosphere of plants can significantly improve agricultural productivity; however, the mechanism by which microorganisms specifically affect agricultural productivity is poorly understood. To clarify this uncertainly, the rhizospheric microbial communities of super rice plants at various growth stages were analysed using 16S rRNA high-throughput gene sequencing; microbial communities were then related to soil properties and rice productivity. The rhizospheric bacterial communities were characterized by the phyla Proteobacteria, Acidobacteria, Chloroflexi, and Verrucomicrobia during all stages of rice growth. Rice production differed by approximately 30% between high- and low-yield sites that had uniform fertilization regimes and climatic conditions, suggesting the key role of microbial communities. Mantel tests showed a strong correlation between soil conditions and rhizospheric bacterial communities, and microorganisms had different effects on crop yield. Among the four growing periods, the rhizospheric bacterial communities present during the heading stage showed a more significant correlation (p <  0.05) with crop yield, suggesting their potential in regulating crop production. The biological properties (i.e., microbes) reflected the situation of agricultural land better than the physicochemical characterics (i.e., nutrient elements), which provides theoretical support for agronomic production. Molecular ecological network (MEN) analysis suggested that differences in productivity were caused by the interaction between the soil characteristics and the bacterial communities. During the heading stage of rice cropping, the rhizospheric microbial community is vital for the resulting rice yield. According to network analysis, the cooperative relationship (i.e., positive interaction) between between microbes may contribute significantly to yield, and the biological properties (i.e., microbes) better reflected the real conditions of agricultural land than did the physicochemical characteristics (i.e., nutrient elements).

【 授权许可】

CC BY