Reconstruction of an SSR-based Magnaporthe oryzae physical map to locate avirulence gene AvrPi12

BMC Microbiology

Jianqiang Wen¹  Yaling Zhang²  Tonghui Li³ 

[1] College of Agronomy, Heilongjiang Bayi Agricultural University, Daqing, China;Department of Plant Pathology, University of Arkansas, Fayetteville, USA;State Key laboratory for Conservation and Utilization of Subtropic Agrobioresurces, Guangdong Provincial Key Laboratory for Crop Molecular Breeding, College of Agriculture, South China Agricultural University, Guangzhou, China

关键词: Magnaporthe oryzae;    SSR physical map;    Avirulence gene;    AvrPi12;    Genetic and physical mapping;   

DOI  :  10.1186/s12866-018-1192-x

学科分类：微生物学和免疫学

来源: BioMed Central

【 摘 要 】

Pathogen avirulence (Avr) genes can evolve rapidly when challenged by the widespread deployment of host genes for resistance. They can be effectively isolated by positional cloning provided a robust and well-populated genetic map is available. An updated, SSR-based physical map of the rice blast pathogen Magnaporthe oryzae (Mo) has been constructed based on 116 of the 120 SSRs used to assemble the last map, along with 18 newly developed ones. A comparison between the two versions of the map has revealed an altered marker content and order within most of the Mo chromosomes. The avirulence gene AvrPi12 was mapped in a population of 219 progeny derived from a cross between the two Mo isolates CHL42 and CHL357. A bulked segregant analysis indicated that the gene was located on chromosome 6, a conclusion borne out by an analysis of the pattern of segregation shown by individual isolates. Six additional PCR-based markers were developed to improve the map resolution in the key region. AvrPi12 was finally located within the sub-telomeric region of chromosome 6, distal to the SSR locus LSM6–5. The improved SSR-based linkage map should be useful as a platform for gene mapping and isolation in Mo. It was used to establish the location of AvrPi12, thereby providing a starting point for its positional cloning.

【 授权许可】

CC BY