The Yeast DNA Damage Checkpoint Kinase Rad53 Targets the Exoribonuclease, Xrn1

G3: Genes, Genomes, Genetics

article

Jessica P. Lao¹  Katie M. Ulrich¹  Jeffrey R. Johnson²  Billy W. Newton²  Ajay A. Vashisht³  James A. Wohlschlegel³  Nevan J. Krogan²  David P. Toczyski¹ 

[1] Department of Biochemistry and Biophysics, University of California, San Francisco, CA 94158;Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158;Department of Biological Chemistry, School of Medicine, University of California, Los Angeles, CA 90095

关键词: DNA Damage Response;    checkpoint;    Xrn1;    Rad53;    phosphoproteomics;   

DOI  :  10.1534/g3.118.200767

学科分类：社会科学、人文和艺术（综合）

来源: Genetics Society of America

【 摘 要 】

The highly conserved DNA damage response (DDR) pathway monitors the genomic integrity of the cell and protects against genotoxic stresses. The apical kinases, Mec1 and Tel1 (ATR and ATM in human, respectively), initiate the DNA damage signaling cascade through the effector kinases, Rad53 and Chk1, to regulate a variety of cellular processes including cell cycle progression, DNA damage repair, chromatin remodeling, and transcription. The DDR also regulates other cellular pathways, but direct substrates and mechanisms are still lacking. Using a mass spectrometry-based phosphoproteomic screen in Saccharomyces cerevisiae , we identified novel targets of Rad53, many of which are proteins that are involved in RNA metabolism. Of the 33 novel substrates identified, we verified that 12 are directly phosphorylated by Rad53 in vitro : Xrn1, Gcd11, Rps7b, Ded1, Cho2, Pus1, Hst1, Srv2, Set3, Snu23, Alb1, and Scp160. We further characterized Xrn1, a highly conserved 5′ exoribonuclease that functions in RNA degradation and the most enriched in our phosphoproteomics screen. Phosphorylation of Xrn1 by Rad53 does not appear to affect Xrn1’s intrinsic nuclease activity in vitro , but may affect its activity or specificity in vivo .

【 授权许可】

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