期刊论文详细信息
Movement Ecology
Applications of step-selection functions in ecology and conservation
Mark S Boyce2  Simone Ciuti1  Henrik Thurfjell2 
[1] Department of Biometry and Environmental System Analysis, University of Freiburg, Freiburg 79106, Germany;Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada
关键词: Individual modelling;    Remote sensing;    Geographic Information System GIS;    Habitat selection;    Broken stick model;    State-space model;    GPS telemetry;    Resource Selection Probability Function RSPF;    Resource Selection Function RSF;    Step Selection Function SSF;   
Others  :  802490
DOI  :  10.1186/2051-3933-2-4
 received in 2013-08-15, accepted in 2014-02-03,  发布年份 2014
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【 摘 要 】

Recent progress in positioning technology facilitates the collection of massive amounts of sequential spatial data on animals. This has led to new opportunities and challenges when investigating animal movement behaviour and habitat selection. Tools like Step Selection Functions (SSFs) are relatively new powerful models for studying resource selection by animals moving through the landscape. SSFs compare environmental attributes of observed steps (the linear segment between two consecutive observations of position) with alternative random steps taken from the same starting point. SSFs have been used to study habitat selection, human-wildlife interactions, movement corridors, and dispersal behaviours in animals. SSFs also have the potential to depict resource selection at multiple spatial and temporal scales. There are several aspects of SSFs where consensus has not yet been reached such as how to analyse the data, when to consider habitat covariates along linear paths between observations rather than at their endpoints, how many random steps should be considered to measure availability, and how to account for individual variation. In this review we aim to address all these issues, as well as to highlight weak features of this modelling approach that should be developed by further research. Finally, we suggest that SSFs could be integrated with state-space models to classify behavioural states when estimating SSFs.

【 授权许可】

   
2014 Thurfjell et al.; licensee BioMed Central Ltd.

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【 参考文献 】
  • [1]Tomkiewicz SM, Fuller MR, Kie JG, Bates KK: Global positioning system and associated technologies in animal behaviour and ecological research. Philos T R Soc B 2010, 365:2163-2176.
  • [2]Cagnacci F, Boitani L, Powell RA, Boyce MS: Animal ecology meets GPS-based radiotelemetry: a perfect storm of opportunities and challenges. Philos T R Soc B 2010, 365:2157-2162.
  • [3]Frair JL, Fieberg J, Hebblewhite M, Cagnacci F, DeCesare NJ, Pedrotti L: Resolving issues of imprecise and habitat-biased locations in ecological analyses using GPS telemetry data. Philos T R Soc B 2010, 365:2187-2200.
  • [4]Fieberg J, Matthiopoulos J, Hebblewhite M, Boyce MS, Frair JL: Correlation and studies of habitat selection: problem, red herring or opportunity? Philos T R Soc B 2010, 365:2233-2244.
  • [5]Gaillard JM, Hebblewhite M, Loison A, Fuller M, Powell R, Basille M, Van Moorter B: Habitat-performance relationships: finding the right metric at a given spatial scale. Philos T R Soc B 2010, 365:2255-2265.
  • [6]Manly BF, McDonald LL, Thomas DL, McDonald TL, Erickson WP: Resource selection by animals: statistical design and analysis for field studies. Dordrecht, The Netherlands: Kluwer Academic Publishers; 2002.
  • [7]Boyce MS: Scale for resource selection functions. Divers Distrib 2006, 12:269-276.
  • [8]Hebblewhite M, Merrill E: Modelling wildlife-human relationships for social species with mixed-effects resource selection models. J Appl Ecol 2008, 45:834-844.
  • [9]Lele SR: A new method for estimation of resource selection probability function. Journal Widl Manag 2009, 73:122-127.
  • [10]Ryan PG, Petersen SL, Peters G, Gremillet D: GPS tracking a marine predator: the effects of precision, resolution and sampling rate on foraging tracks of African Penguins. Mar Biol 2004, 145:215-223.
  • [11]Fortin D, Beyer HL, Boyce MS, Smith DW, Duchesne T, Mao JS: Wolves influence elk movements: behavior shapes a trophic cascade in Yellowstone National Park. Ecology 2005, 86:1320-1330.
  • [12]Matthiopoulos J, Hebblewhite M, Aarts G, Fieberg J: Generalized functional responses for species distributions. Ecology 2011, 92:583-589.
  • [13]Johnson CJ, Gillingham MP: Sensitivity of species-distribution models to error, bias, and model design: an application to resource selection functions for woodland caribou. Ecol Model 2008, 213:143-155.
  • [14]Moorcroft PR, Lewis MA, Crabtree RL: Mechanistic home range models capture spatial patterns and dynamics of coyote territories in Yellowstone. P Roy Soc 2006, 273:1651-1659.
  • [15]Chetkiewicz CLB, Clair CCS, Boyce MS: Corridors for conservation: integrating pattern and process. Annu Rev Ecol Evol S 2006, 37:317-342.
  • [16]Squires JR, DeCesare NJ, Olson LE, Kolbe JA, Hebblewhite M, Parks SA: Combining resource selection and movement behavior to predict corridors for Canada lynx at their southern range periphery. Biol Conserv 2013, 157:187-195.
  • [17]Roever CL, Boyce MS, Stenhouse GB: Grizzly bear movements relative to roads: application of step selection functions. Ecography 2010, 33:1113-1122.
  • [18]Lele SR, Keim JL: Weighted distributions and estimation of resource selection probability functions. Ecology 2006, 87:3021-3028.
  • [19]Johnson DS, Thomas DL, Hoef JMV, Christ A: A general framework for the analysis of animal resource selection from telemetry data. Biometrics 2008, 64:968-976.
  • [20]Forester JD, Im HK, Rathouz PJ: Accounting for animal movement in estimation of resource selection functions: sampling and data analysis. Ecology 2009, 90:3554-3565.
  • [21]Turchin P: Quantitative analysis of movement: measuring and modelling population reditribution in animals and plants. Sunderland, Massachusetts, USA: Sinauer Associates; 1998.
  • [22]Dickson BG, Jenness JS, Beier P: Influence of vegetation, topography, and roads on cougar movement in southern California. J Wildl Manag 2005, 69:264-276.
  • [23]Richard Y, Armstrong DP: Cost distance modelling of landscape connectivity and gap-crossing ability using radio-tracking data. J Appl Ecol 2010, 47:603-610.
  • [24]Leblond M, Dussault C, Ouellet JP: What drives fine-scale movements of large herbivores? A case study using moose. Ecography 2010, 33:1102-1112.
  • [25]Latham ADM, Latham MC, Boyce MS, Boutin S: Movement responses by wolves to industrial linear features and their effect on woodland caribou in northeastern Alberta. Ecol Appl 2011, 21:2854-2865.
  • [26]van Beest FM, Van Moorter B, Milner JM: Temperature-mediated habitat use and selection by a heat-sensitive northern ungulate. Anim Behav 2012, 84:723-735.
  • [27]Northrup JM, Pitt J, Muhly TB, Stenhouse GB, Musiani M, Boyce MS: Vehicle traffic shapes grizzly bear behaviour on a multiple-use landscape. J Appl Ecol 2012, 49:1159-1167.
  • [28]Hodson J, Fortin D, Belanger L: Fine-scale disturbances shape space-use patterns of a boreal forest herbivore. J Mammal 2010, 91:607-619.
  • [29]Johnson DH: The comparision of usage and availability measurements for evaluating resource preference. Ecology 1980, 61:65-71.
  • [30]Kittle AM, Fryxell JM, Desy GE, Hamr J: The scale-dependent impact of wolf predation risk on resource selection by three sympatric ungulates. Oecologia 2008, 157:163-175.
  • [31]Boyce MS, Mao JS, Merrill EH, Fortin D, Turner MG, Fryxell J, Turchin P: Scale and heterogeneity in habitat selection by elk in Yellowstone National Park. Ecoscience 2003, 10:421-431.
  • [32]Godvik IMR, Loe LE, Vik JO, Veiberg V, Langvatn R, Mysterud A: Temporal scales, trade-offs, and functional responses in red deer habitat selection. Ecology 2009, 90:699-710.
  • [33]Nielsen SE, Boyce MS, Stenhouse GB: Grizzly bears and forestry I. Selection of clearcuts by grizzly bears in west-central Alberta, Canada. Forest Ecol Manag 2004, 199:51-65.
  • [34]Pettorelli N, Gaillard JM, Yoccoz NG, Duncan P, Maillard D, Delorme D, Van Laere G, Toigo C: The response of fawn survival to changes in habitat quality varies according to cohort quality and spatial scale. J Anim Ecol 2005, 74:972-981.
  • [35]DeCesare NJ, Hebblewhite M, Schmiegelow F, Hervieux D, McDermid GJ, Neufeld L, Bradley M, Whittington J, Smith KG, Morgantini LE, et al.: Transcending scale dependence in identifying habitat with resource selection functions. Ecol Appl 2012, 22:1068-1083.
  • [36]Olivier F, Wotherspoon SJ: Nest selection by snow petrels Pagodroma nivea in East Antarctica - Validating predictive habitat selection models at the continental scale. Ecol Model 2008, 210:414-430.
  • [37]Bowyer RT, Kie JG, VanBallenberghe V: Sexual segregation in black-tailed deer: effects of scale. J Wildlife Manag 1996, 60:10-17.
  • [38]Arthur SM, Manly BFJ, MacDonald LL, Garner GW: Assessing habitat selection when availability changes. Ecology 1996, 77:215-227.
  • [39]Nams VO: Sampling animal movement paths causes turn autocorrelation. Acta Biotheor 2013, 61:269-284.
  • [40]Anderson KE, Nisbet RM, Diehl S, Cooper SD: Scaling population responses to spatial environmental variability in advection-dominated systems. Ecol Lett 2005, 8:933-943.
  • [41]Mysterud A, Lian LB, Hjermann DO: Scale-dependent trade-offs in foraging by European roe deer (Capreolus capreolus) during winter. Can J Zool 1999, 77:1486-1493.
  • [42]Jerde CL, Visscher DR: GPS measurement error influences on movement model parameterization. Ecol Appl 2005, 15:806-810.
  • [43]Fortin M-J, James PMA, MacKenzie A, Melles SJ, Rayfield B: Spatial statistics, spatial regression, and graph theory in ecology. Spatial Stat 2012, 1:100-109.
  • [44]Morales JM, Haydon DT, Frair J, Holsiner KE, Fryxell JM: Extracting more out of relocation data: building movement models as mixtures of random walks. Ecology 2004, 85:2436-2445.
  • [45]Northrup JM, Hooten MB, Anderson CR, Wittemyer G: Practical guidance on characterizing availability in resource selection functions under a use–availability design. Ecology 2013, 94:1456-1463.
  • [46]Coulon A, Morellet N, Goulard M, Cargnelutti B, Angibault JM, Hewison AJM: Inferring the effects of landscape structure on roe deer (Capreolus capreolus) movements using a step selection function. Landscape Ecol 2008, 23:603-614.
  • [47]Gillies CS, Beyer HL, St Clair CC: Fine-scale movement decisions of tropical forest birds in a fragmented landscape. Ecol Appl 2011, 21:944-954.
  • [48]Thurfjell H, Ball JP, Ahlen PA, Kornacher P, Dettki H, Sjoberg K: Habitat use and spatial patterns of wild boar Sus scrofa (L.): agricultural fields and edges. Eur J Wildlife Res 2009, 55:517-523.
  • [49]Eriksen A, Wabakken P, Zimmermann B, Andreassen HP, Arnemo JM, Gundersen H, Milner JM, Liberg O, Linnell J, Pedersen HC, et al.: Encounter frequencies between GPS-collared wolves (Canis lupus) and moose (Alces alces) in a Scandinavian wolf territory. Ecol Res 2009, 24:547-557.
  • [50]Duchesne T, Fortin D, Courbin N: Mixed conditional logistic regression for habitat selection studies. J Anim Ecol 2010, 79:548-555.
  • [51]Revelt D, Train K: Mixed logit with repeated choices: households' choices of appliance efficiency level. Rev Econ Stat 1998, 80:647-657.
  • [52]R Core Team: R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing; 2013. URL http://www.R-project.org/ webcite
  • [53]Wolf M, Weissing FJ: Animal personalities: consequences for ecology and evolution. Trends Ecol Evol 2012, 27:452-461.
  • [54]Bolnick DI, Svanback R, Fordyce JA, Yang LH, Davis JM, Hulsey CD, Forister ML: The ecology of individuals: incidence and implications of individual specialization. Am Nat 2003, 161:1-28.
  • [55]Burnham KP, Anderson DR: Model Selection and Multi-Model Inference: a Practical Information-Theoretic Approach. 2nd edition. New York: Springer-Verlag New-York, Inc; 2002.
  • [56]Nielson SE, Boyce MS, Stenhouse GB, Munro RHM: Modeling grizzly bear habitats in the Yellowhead Ecosystem of Alberta: taking autocorrelation seriously. Ursus 2002, 13:45-56.
  • [57]Sawyer H, Nielson RM, Lindzey F, McDonald LL: Winter habitat selection of mule deer before and during development of a natural gas field. J Wildlife Manag 2006, 70:396-403.
  • [58]De Solla SR, Bonduriansky R, Brooks RJ: Eliminating autocorrelation reduces biological relevance of home range estimates. J Anim Ecol 1999, 68:221-234.
  • [59]Boyce MS, Vernier PR, Nielsen SE, Schmiegelow FKA: Evaluating resource selection functions. Ecol Model 2002, 157:281-300.
  • [60]Guisan A, Theurillat JP, Kienast F: Predicting the potential distribution of plant species in an Alpine environment. J Veg Sci 1998, 9:65-74.
  • [61]Pearce J, Ferrier S: Evaluating the predictive performance of habitat models developed using logistic regression. Ecol Model 2000, 133:225-245.
  • [62]Johnson CJ, Nielsen SE, Merrill EH, Mcdonald TL, Boyce MS: Resource selection functions based on use-availability data: theoretical motivation and evaluation methods. J Wildl Manag 2006, 70:347-357.
  • [63]Hirzel AH, Le Lay G, Helfer V, Randin C, Guisan A: Evaluating the ability of habitat suitability models to predict species presences. Ecol Model 2006, 199:142-152.
  • [64]Bjorneraas K, Solberg EJ, Herfindal I, Van Moorter B, Rolandsen CM, Tremblay JP, Skarpe C, Saether BE, Eriksen R, Astrup R: Moose Alces alces habitat use at multiple temporal scales in a human-altered landscape. Wildl Biol 2011, 17:44-54.
  • [65]Morellet N, Van Moorter B, Cargnelutti B, Angibault JM, Lourtet B, Merlet J, Ladet S, Hewison AJM: Landscape composition influences roe deer habitat selection at both home range and landscape scales. Landscape Ecol 2011, 26:999-1010.
  • [66]Johnson CJ, Parker KL, Heard DC, Gillingham MP: Movement parameters of ungulates and scale-specific responses to the environment. J Anim Ecol 2002, 71:225-235.
  • [67]Jonsen ID, Flenming JM, Myers RA: Robust state-space modeling of animal movement data. Ecology 2005, 86:2874-2880.
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