期刊论文详细信息
Cell & Bioscience
Division of labor between IRF1 and IRF2 in regulating different stages of transcriptional activation in cellular antiviral activities
Keji Zhao2  Zhiying Zhang1  Kairong Cui2  Gang Ren2 
[1] College of Animal Science and Technology, Northwest A&F University, Yangling 712100, Shaanxi, PR China;Systems Biology Center, Division of Intramural Research, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda 20892, MD, USA
关键词: Antiviral activities;    Transcription;    ChIP;    BRG1;    IRF2;    IRF1;   
Others  :  1220354
DOI  :  10.1186/s13578-015-0007-0
 received in 2015-03-12, accepted in 2015-03-27,  发布年份 2015
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【 摘 要 】

Background

Cellular antiviral activities are critically controlled by transcriptional activation of interferon-inducible genes, involving interferon regulatory factors (IRFs). Previous data suggested that IRF1 is an activator and IRF2 is a repressor, which functionally antagonize each other in transcriptional regulation. However, it is not clear how these two factors function to regulate cellular antiviral activities.

Results

We show that IRF2 is critically required for the induction of the TLR3 and other interferon-inducible genes in a chromatin environment. While both IRF1 and IRF2 directly interact with the BAF chromatin remodeling complex, IRF2 is associated with the TLR3 promoter in the unstimulated state and IRF1 binding to the promoter is strongly induced by stimulation with interferon, suggesting that these two factors may function at different stages of gene induction in the recruitment of the BAF complex. IRF2 acts to maintain the basal level expression, an open chromatin structure, and active histone modification marks (H3K9, K14 acetylation and H3K4 tri-methylation) of the TLR3 promoter in the unstimulated state, while IRF1 serves to rapidly activate the promoter upon stimulation.

Conclusions

IRF1 and IRF2 of the IRF family of transcription factors play distinct roles in cellular response to viral infection. IRF2 binds to TLR3 and other IFN-inducible gene promoters and maintains an active chromatin structure in the unstimulated state, which is required for their induction, while IRF1 binding to these promoters activates their transcription upon viral infection. Thus, the division of labor between the IRF transcription factor family members plays a pivotal role in coordinating the transcriptional activation in the cellular antiviral response.

【 授权许可】

   
2015 Ren et al.; licensee BioMed Central.

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【 参考文献 】
  • [1]Baltimore D. Our genome unveiled. Nature. 2001; 409:814-6.
  • [2]Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J et al.. Initial sequencing and analysis of the human genome. Nature. 2001; 409:860-921.
  • [3]Ruvkun G, Hobert O. The taxonomy of developmental control in Caenorhabditis elegans. Science. 1998; 282:2033-41.
  • [4]Levine M, Tjian R. Transcription regulation and animal diversity. Nature. 2003; 424:147-51.
  • [5]Harada H, Willison K, Sakakibara J, Miyamoto M, Fujita T, Taniguchi T. Absence of the type I IFN system in EC cells: transcriptional activator (IRF-1) and repressor (IRF-2) genes are developmentally regulated. Cell. 1990; 63:303-12.
  • [6]Akira S, Takeda K. Toll-like receptor signalling. Nat Rev Immunol. 2004; 4:499-511.
  • [7]Mamane Y, Heylbroeck C, Genin P, Algarte M, Servant MJ, LePage C et al.. Interferon regulatory factors: the next generation. Gene. 1999; 237:1-14.
  • [8]Taniguchi T, Ogasawara K, Takaoka A, Tanaka N. IRF family of transcription factors as regulators of host defense. Annu Rev Immunol. 2001; 19:623-55.
  • [9]Oshima S, Nakamura T, Namiki S, Okada E, Tsuchiya K, Okamoto R et al.. Interferon regulatory factor 1 (IRF-1) and IRF-2 distinctively up-regulate gene expression and production of interleukin-7 in human intestinal epithelial cells. Mol Cell Biol. 2004; 24:6298-310.
  • [10]Alexopoulou L, Holt AC, Medzhitov R, Flavell RA. Recognition of double-stranded RNA and activation of NF-kappaB by Toll-like receptor 3. Nature. 2001; 413:732-8.
  • [11]Stark GR, Kerr IM, Williams BR, Silverman RH, Schreiber RD. How cells respond to interferons. Annu Rev Biochem. 1998; 67:227-64.
  • [12]Cui K, Tailor P, Liu H, Chen X, Ozato K, Zhao K. The chromatin-remodeling BAF complex mediates cellular antiviral activities by promoter priming. Mol Cell Biol. 2004; 24:4476-86.
  • [13]Imbalzano AN, Kwon H, Green MR, Kingston RE. Facilitated binding of TATA-binding protein to nucleosomal DNA. Nature. 1994; 370:481-5.
  • [14]Khavari PA, Peterson CL, Tamkun JW, Mendel DB, Crabtree GR. BRG1 contains a conserved domain of the SWI2/SNF2 family necessary for normal mitotic growth and transcription. Nature. 1993; 366:170-4.
  • [15]Wang W, Cote J, Xue Y, Zhou S, Khavari PA, Biggar SR et al.. Purification and biochemical heterogeneity of the mammalian SWI-SNF complex. EMBO J. 1996; 15:5370-82.
  • [16]Heinz S, Haehnel V, Karaghiosoff M, Schwarzfischer L, Muller M, Krause SW et al.. Species-specific regulation of toll-like receptor 3 genes in men and mice. J Biol Chem. 2003; 278:21502-9.
  • [17]Liu R, Liu H, Chen X, Kirby M, Brown PO, Zhao K. Regulation of CSF1 promoter by the SWI/SNF-like BAF complex. Cell. 2001; 106:309-18.
  • [18]Liu H, Kang H, Liu R, Chen X, Zhao K. Maximal induction of a subset of interferon target genes requires the chromatin-remodeling activity of the BAF complex. Mol Cell Biol. 2002; 22:6471-9.
  • [19]Harada H, Fujita T, Miyamoto M, Kimura Y, Maruyama M, Furia A et al.. Structurally similar but functionally distinct factors, IRF-1 and IRF-2, bind to the same regulatory elements of IFN and IFN-inducible genes. Cell. 1989; 58:729-39.
  • [20]Yan Z, Cui K, Murray DM, Ling C, Xue Y, Gerstein A et al.. PBAF chromatin-remodeling complex requires a novel specificity subunit, BAF200, to regulate expression of selective interferon-responsive genes. Genes Dev. 2005; 19:1662-7.
  • [21]Wang Z, Schones DE, Zhao K. Characterization of human epigenomes. Curr Opin Genet Dev. 2009; 19:127-34.
  • [22]Kamijo R, Harada H, Matsuyama T, Bosland M, Gerecitano J, Shapiro D et al.. Requirement for transcription factor IRF-1 in NO synthase induction in macrophages. Science. 1994; 263:1612-5.
  • [23]Rogatsky I, Chandrasekaran U, Manni M, Yi W, Pernis AB. Epigenetics and the IRFs: a complex interplay in the control of immunity and autoimmunity. Autoimmunity. 2014; 47:242-55.
  • [24]Masumi A, Ozato K. Coactivator p300 acetylates the interferon regulatory factor-2 in U937 cells following phorbol ester treatment. J Biol Chem. 2001; 276:20973-80.
  • [25]Masumi A, Wang IM, Lefebvre B, Yang XJ, Nakatani Y, Ozato K. The histone acetylase PCAF is a phorbol-ester-inducible coactivator of the IRF family that confers enhanced interferon responsiveness. Mol Cell Biol. 1999; 19:1810-20.
  • [26]Fujita T, Kimura Y, Miyamoto M, Barsoumian EL, Taniguchi T. Induction of endogenous IFN-alpha and IFN-beta genes by a regulatory transcription factor, IRF-1. Nature. 1989; 337:270-2.
  • [27]Lohoff M, Duncan GS, Ferrick D, Mittrucker HW, Bischof S, Prechtl S et al.. Deficiency in the transcription factor interferon regulatory factor (IRF)-2 leads to severely compromised development of natural killer and T helper type 1 cells. J Exp Med. 2000; 192:325-36.
  • [28]Matsuyama T, Kimura T, Kitagawa M, Pfeffer K, Kawakami T, Watanabe N et al.. Targeted disruption of IRF-1 or IRF-2 results in abnormal type I IFN gene induction and aberrant lymphocyte development. Cell. 1993; 75:83-97.
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