Epigenetics & Chromatin | |
DNA methylation reader MECP2: cell type- and differentiation stage-specific protein distribution | |
Irina Solovei4  Boris Joffe4  Heinrich Leonhardt4  Adrian Bird2  Maria Cristina Cardoso5  Hiroshi Kimura1  Katharina Laurence Jost5  Leo Peichl3  Jacky Guy2  Yana Feodorova4  Congdi Song4  | |
[1] Graduate School of Frontier Biosciences, Osaka University, 1-3 Yamadaoka, 565-0871 Suita, Osaka, Japan;Wellcome Trust Centre for Cell Biology, University of Edinburgh, EH9 3JR Edinburgh, UK;Max Planck Institute for Brain Research, Max-von-Laue-Str. 4, Frankfurt am Main 60438, Germany;Department of Biology II, Center for Integrated Protein Science Munich (CIPSM), Ludwig Maximilians University Munich, Grosshadernerstrasse 2, 82152 Planegg-Martinsried, Germany;Cell Biology and Epigenetics, Department of Biology, Technische Universität Darmstadt, Schnittspahnstr. 10, Darmstadt 64287, Germany | |
关键词: Mouse tissues; Retina development; Mouse retina; Nuclear architecture; Histone modifications; MBD; MECP2; | |
Others : 1120585 DOI : 10.1186/1756-8935-7-17 |
|
received in 2014-06-22, accepted in 2014-07-23, 发布年份 2014 | |
【 摘 要 】
Background
Methyl-CpG binding protein 2 (MECP2) is a protein that specifically binds methylated DNA, thus regulating transcription and chromatin organization. Mutations in the gene have been identified as the principal cause of Rett syndrome, a severe neurological disorder. Although the role of MECP2 has been extensively studied in nervous tissues, still very little is known about its function and cell type specific distribution in other tissues.
Results
Using immunostaining on tissue cryosections, we characterized the distribution of MECP2 in 60 cell types of 16 mouse neuronal and non-neuronal tissues. We show that MECP2 is expressed at a very high level in all retinal neurons except rod photoreceptors. The onset of its expression during retina development coincides with massive synapse formation. In contrast to astroglia, retinal microglial cells lack MECP2, similar to microglia in the brain, cerebellum, and spinal cord. MECP2 is also present in almost all non-neural cell types, with the exception of intestinal epithelial cells, erythropoietic cells, and hair matrix keratinocytes. Our study demonstrates the role of MECP2 as a marker of the differentiated state in all studied cells other than oocytes and spermatogenic cells. MECP2-deficient male (Mecp2-/y) mice show no apparent defects in the morphology and development of the retina. The nuclear architecture of retinal neurons is also unaffected as the degree of chromocenter fusion and the distribution of major histone modifications do not differ between Mecp2-/y and Mecp2wt mice. Surprisingly, the absence of MECP2 is not compensated by other methyl-CpG binding proteins. On the contrary, their mRNA levels were downregulated in Mecp2-/y mice.
Conclusions
MECP2 is almost universally expressed in all studied cell types with few exceptions, including microglia. MECP2 deficiency does not change the nuclear architecture and epigenetic landscape of retinal cells despite the missing compensatory expression of other methyl-CpG binding proteins. Furthermore, retinal development and morphology are also preserved in Mecp2-null mice. Our study reveals the significance of MECP2 function in cell differentiation and sets the basis for future investigations in this direction.
【 授权许可】
2014 Song et al.; licensee BioMed Central Ltd.
【 预 览 】
Files | Size | Format | View |
---|---|---|---|
20150210042539104.pdf | 11029KB | download | |
Figure 8. | 112KB | Image | download |
Figure 7. | 122KB | Image | download |
Figure 6. | 224KB | Image | download |
Figure 5. | 111KB | Image | download |
Figure 4. | 199KB | Image | download |
Figure 3. | 204KB | Image | download |
Figure 2. | 146KB | Image | download |
Figure 1. | 188KB | Image | download |
【 图 表 】
Figure 1.
Figure 2.
Figure 3.
Figure 4.
Figure 5.
Figure 6.
Figure 7.
Figure 8.
【 参考文献 】
- [1]Lewis JD, Meehan RR, Henzel WJ, Maurer-Fogy I, Jeppesen P, Klein F, Bird A: Purification, sequence, and cellular localization of a novel chromosomal protein that binds to methylated DNA. Cell 1992, 69:905-914.
- [2]Amir RE, Van den Veyver IB, Wan M, Tran CQ, Francke U, Zoghbi HY: Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2. Nat Genet 1999, 23:185-188.
- [3]Chahrour M, Zoghbi HY: The story of Rett syndrome: from clinic to neurobiology. Neuron 2007, 56:422-437.
- [4]Gonzales ML, LaSalle JM: The role of MeCP2 in brain development and neurodevelopmental disorders. Curr Psychiatry Rep 2010, 12:127-134.
- [5]Moretti P, Zoghbi HY: MeCP2 dysfunction in Rett syndrome and related disorders. Curr Opin Genet Dev 2006, 16:276-281.
- [6]Pinto D, Delaby E, Merico D, Barbosa M, Merikangas A, Klei L, Thiruvahindrapuram B, Xu X, Ziman R, Wang Z, Vorstman JA, Thompson A, Regan R, Pilorge M, Pellecchia G, Pagnamenta AT, Oliveira B, Marshall CR, Magalhaes TR, Lowe JK, Howe JL, Griswold AJ, Gilbert J, Duketis E, Dombroski BA, De Jonge MV, Cuccaro M, Crawford EL, Correia CT, Conroy J, et al.: Convergence of genes and cellular pathways dysregulated in autism spectrum disorders. Am J Hum Genet 2014, 94:677-694.
- [7]Bird A: The methyl-CpG-binding protein MeCP2 and neurological disease. Biochem Soc Trans 2008, 36:575-583.
- [8]Chen RZ, Akbarian S, Tudor M, Jaenisch R: Deficiency of methyl-CpG binding protein-2 in CNS neurons results in a Rett-like phenotype in mice. Nat Genet 2001, 27:327-331.
- [9]Guy J, Hendrich B, Holmes M, Martin JE, Bird A: A mouse Mecp2-null mutation causes neurological symptoms that mimic Rett syndrome. Nat Genet 2001, 27:322-326.
- [10]Shahbazian MD, Zoghbi HY: Rett syndrome and MeCP2: linking epigenetics and neuronal function. Am J Hum Genet 2002, 71:1259-1272.
- [11]Cobb S, Guy J, Bird A: Reversibility of functional deficits in experimental models of Rett syndrome. Biochem Soc Trans 2010, 38:498-506.
- [12]Giacometti E, Luikenhuis S, Beard C, Jaenisch R: Partial rescue of MeCP2 deficiency by postnatal activation of MeCP2. Proc Natl Acad Sci USA 2007, 104:1931-1936.
- [13]Guy J, Gan J, Selfridge J, Cobb S, Bird A: Reversal of neurological defects in a mouse model of Rett syndrome. Science 2007, 315:1143-1147.
- [14]Luikenhuis S, Giacometti E, Beard CF, Jaenisch R: Expression of MeCP2 in postmitotic neurons rescues Rett syndrome in mice. Proc Natl Acad Sci USA 2004, 101:6033-6038.
- [15]Chao HT, Zoghbi HY, Rosenmund C: MeCP2 controls excitatory synaptic strength by regulating glutamatergic synapse number. Neuron 2007, 56:58-65.
- [16]Smrt RD, Eaves-Egenes J, Barkho BZ, Santistevan NJ, Zhao C, Aimone JB, Gage FH, Zhao X: Mecp2 deficiency leads to delayed maturation and altered gene expression in hippocampal neurons. Neurobiol Dis 2007, 27:77-89.
- [17]Zhou Z, Hong EJ, Cohen S, Zhao WN, Ho HY, Schmidt L, Chen WG, Lin Y, Savner E, Griffith EC, Hu L, Steen JA, Weitz CJ, Greenberg ME: Brain-specific phosphorylation of MeCP2 regulates activity-dependent Bdnf transcription, dendritic growth, and spine maturation. Neuron 2006, 52:255-269.
- [18]Dani VS, Chang Q, Maffei A, Turrigiano GG, Jaenisch R, Nelson SB: Reduced cortical activity due to a shift in the balance between excitation and inhibition in a mouse model of Rett syndrome. Proc Natl Acad Sci U S A 2005, 102:12560-12565.
- [19]Wood L, Gray NW, Zhou Z, Greenberg ME, Shepherd GM: Synaptic circuit abnormalities of motor-frontal layer 2/3 pyramidal neurons in an RNA interference model of methyl-CpG-binding protein 2 deficiency. J Neurosci 2009, 29:12440-12448.
- [20]Medrihan L, Tantalaki E, Aramuni G, Sargsyan V, Dudanova I, Missler M, Zhang W: Early defects of GABAergic synapses in the brain stem of a MeCP2 mouse model of Rett syndrome. J Neurophysiol 2008, 99:112-121.
- [21]Ballas N, Lioy DT, Grunseich C, Mandel G: Non-cell autonomous influence of MeCP2-deficient glia on neuronal dendritic morphology. Nat Neurosci 2009, 12:311-317.
- [22]Chen WG, Chang Q, Lin Y, Meissner A, West AE, Griffith EC, Jaenisch R, Greenberg ME: Derepression of BDNF transcription involves calcium-dependent phosphorylation of MeCP2. Science 2003, 302:885-889.
- [23]Tao J, Hu K, Chang Q, Wu H, Sherman NE, Martinowich K, Klose RJ, Schanen C, Jaenisch R, Wang W, Sun YE: Phosphorylation of MeCP2 at Serine 80 regulates its chromatin association and neurological function. Proc Natl Acad Sci USA 2009, 106:4882-4887.
- [24]Tudor M, Akbarian S, Chen RZ, Jaenisch R: Transcriptional profiling of a mouse model for Rett syndrome reveals subtle transcriptional changes in the brain. Proc Natl Acad Sci USA 2002, 99:15536-15541.
- [25]Maezawa I, Swanberg S, Harvey D, LaSalle JM, Jin LW: Rett syndrome astrocytes are abnormal and spread MeCP2 deficiency through gap junctions. J Neurosci 2009, 29:5051-5061.
- [26]Maezawa I, Jin LW: Rett syndrome microglia damage dendrites and synapses by the elevated release of glutamate. J Neurosci 2010, 30:5346-5356.
- [27]Skene PJ, Illingworth RS, Webb S, Kerr AR, James KD, Turner DJ, Andrews R, Bird AP: Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state. Mol Cell 2010, 37:457-468.
- [28]Joffe B, Leonhardt H, Solovei I: Differentiation and large scale spatial organization of the genome. Curr Opin Genet Dev 2010, 20:562-569.
- [29]Naumova N, Dekker J: Integrating one-dimensional and three-dimensional maps of genomes. J Cell Sci 2010, 123:1979-1988.
- [30]Solovei I, Kreysing M, Lanctot C, Kosem S, Peichl L, Cremer T, Guck J, Joffe B: Nuclear architecture of rod photoreceptor cells adapts to vision in mammalian evolution. Cell 2009, 137:356-368.
- [31]Brero A, Easwaran HP, Nowak D, Grunewald I, Cremer T, Leonhardt H, Cardoso MC: Methyl CpG-binding proteins induce large-scale chromatin reorganization during terminal differentiation. J Cell Biol 2005, 169:733-743.
- [32]Gilbert N, Thomson I, Boyle S, Allan J, Ramsahoye B, Bickmore WA: DNA methylation affects nuclear organization, histone modifications, and linker histone binding but not chromatin compaction. J Cell Biol 2007, 177:401-411.
- [33]Matsumura S, Persson LM, Wong L, Wilson AC: The latency-associated nuclear antigen interacts with MeCP2 and nucleosomes through separate domains. J Virol 2010, 84:2318-2330.
- [34]Probst AV, Okamoto I, Casanova M, El Marjou F, Le Baccon P, Almouzni G: A strand-specific burst in transcription of pericentric satellites is required for chromocenter formation and early mouse development. Dev Cell 2010, 19:625-638.
- [35]Singleton MK, Gonzales ML, Leung KN, Yasui DH, Schroeder DI, Dunaway K, LaSalle JM: MeCP2 is required for global heterochromatic and nucleolar changes during activity-dependent neuronal maturation. Neurobiol Dis 2011, 43:190-200.
- [36]Bertulat B, De Bonis ML, Della Ragione F, Lehmkuhl A, Milden M, Storm C, Jost KL, Scala S, Hendrich B, D'Esposito M, Cardoso MC: MeCP2 dependent heterochromatin reorganization during neural differentiation of a novel Mecp2-deficient embryonic stem cell reporter line. PLoS One 2012, 7:e47848.
- [37]Guy J, Cheval H, Selfridge J, Bird A: The role of MeCP2 in the brain. Annu Rev Cell Dev Biol 2011, 27:631-652.
- [38]Eberhart A, Feodorova Y, Song C, Wanner G, Kiseleva E, Furukawa T, Kimura H, Schotta G, Leonhardt H, Joffe B, Solovei I: Epigenetics of eu- and heterochromatin in inverted and conventional nuclei from mouse retina. Chromosome Res 2013, 21:535-554.
- [39]Eberhart A, Kimura H, Leonhardt H, Joffe B, Solovei I: Reliable detection of epigenetic histone marks and nuclear proteins in tissue cryosections. Chromosome Res 2012, 20:849-858.
- [40]Popova EY, Grigoryev SA, Fan Y, Skoultchi AI, Zhang SS, Barnstable CJ: Developmentally regulated linker histone H1c promotes heterochromatin condensation and mediates structural integrity of rod photoreceptors in mouse retina. J Biol Chem 2013, 288:17895-17907.
- [41]Solovei I, Wang AS, Thanisch K, Schmidt CS, Krebs S, Zwerger M, Cohen TV, Devys D, Foisner R, Peichl L, Herrmann H, Blum H, Engelkamp D, Stewart CL, Leonhardt H, Joffe B: LBR and lamin A/C sequentially tether peripheral heterochromatin and inversely regulate differentiation. Cell 2013, 152:584-598.
- [42]Helmlinger D, Hardy S, Abou-Sleymane G, Eberlin A, Bowman AB, Gansmuller A, Picaud S, Zoghbi HY, Trottier Y, Tora L, Devys D: Glutamine-expanded ataxin-7 alters TFTC/STAGA recruitment and chromatin structure leading to photoreceptor dysfunction. PLoS Biol 2006, 4:e67.
- [43]Siegert S, Cabuy E, Scherf BG, Kohler H, Panda S, Le YZ, Fehling HJ, Gaidatzis D, Stadler MB, Roska B: Transcriptional code and disease map for adult retinal cell types. Nat Neurosci 2012, 15:487-495. S481-482
- [44]Abou-Sleymane G, Chalmel F, Helmlinger D, Lardenois A, Thibault C, Weber C, Merienne K, Mandel JL, Poch O, Devys D, Trottier Y: Polyglutamine expansion causes neurodegeneration by altering the neuronal differentiation program. Hum Mol Genet 2006, 15:691-703.
- [45]Kizilyaprak C, Spehner D, Devys D, Schultz P: The linker histone H1C contributes to the SCA7 nuclear phenotype. Nucleus 2011, 2:444-454.
- [46]Derecki NC, Cronk JC, Lu Z, Xu E, Abbott SB, Guyenet PG, Kipnis J: Wild-type microglia arrest pathology in a mouse model of Rett syndrome. Nature 2012, 484:105-109.
- [47]Durand S, Patrizi A, Quast KB, Hachigian L, Pavlyuk R, Saxena A, Carninci P, Hensch TK, Fagiolini M: NMDA receptor regulation prevents regression of visual cortical function in the absence of Mecp2. Neuron 2012, 76:1078-1090.
- [48]Hahn M, Dambacher S, Dulev S, Kuznetsova AY, Eck S, Wörz S, Sadic D, Schulte M, Mallm JP, Maiser A, Debs P, von Melchner H, Leonhardt H, Schermelleh L, Rohr K, Rippe K, Storchova Z, Schotta G: Suv4-20 h2 mediates chromatin compaction and is important for cohesin recruitment to heterochromatin. Genes Dev 2013, 27:859-872.
- [49]Shahbazian MD, Antalffy B, Armstrong DL, Zoghbi HY: Insight into Rett syndrome: MeCP2 levels display tissue- and cell-specific differences and correlate with neuronal maturation. Hum Mol Genet 2002, 11:115-124.
- [50]Tochiki KK, Cunningham J, Hunt SP, Geranton SM: The expression of spinal methyl-CpG-binding protein 2: DNA methyltransferases and histone deacetylases is modulated in persistent pain states. Mol Pain 2012, 8:14.
- [51]Darwanto A, Kitazawa R, Mori K, Kondo T, Kitazawa S: MeCP2 expression and promoter methylation of cyclin D1 gene are associated with cyclin D1 expression in developing rat epididymal duct. Acta Histochem Cytochem 2008, 41:135-142.
- [52]Agarwal N, Becker A, Jost KL, Haase S, Thakur BK, Brero A, Hardt T, Kudo S, Leonhardt H, Cardoso MC: MeCP2 Rett mutations affect large scale chromatin organization. Hum Mol Genet 2011, 20:4187-4195.
- [53]Baker SA, Chen L, Wilkins AD, Yu P, Lichtarge O, Zoghbi HY: An AT-hook domain in MeCP2 determines the clinical course of Rett syndrome and related disorders. Cell 2013, 152:984-996.
- [54]Chahrour M, Jung SY, Shaw C, Zhou X, Wong ST, Qin J, Zoghbi HY: MeCP2, a key contributor to neurological disease, activates and represses transcription. Science 2008, 320:1224-1229.
- [55]Nan X, Campoy FJ, Bird A: MeCP2 is a transcriptional repressor with abundant binding sites in genomic chromatin. Cell 1997, 88:471-481.
- [56]Nan X, Ng HH, Johnson CA, Laherty CD, Turner BM, Eisenman RN, Bird A: Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex. Nature 1998, 393:386-389.
- [57]Fisher LJ: Development of synaptic arrays in the inner plexiform layer of neonatal mouse retina. J Comp Neurol 1979, 187:359-372.
- [58]Johnson J, Tian N, Caywood MS, Reimer RJ, Edwards RH, Copenhagen DR: Vesicular neurotransmitter transporter expression in developing postnatal rodent retina: GABA and glycine precede glutamate. J Neurosci 2003, 23:518-529.
- [59]Sherry DM, Wang MM, Bates J, Frishman LJ: Expression of vesicular glutamate transporter 1 in the mouse retina reveals temporal ordering in development of rod vs. cone and ON vs. OFF circuits. J Comp Neurol 2003, 465:480-498.
- [60]Young RW: Cell differentiation in the retina of the mouse. Anat Rec 1985, 212:199-205.
- [61]Huntriss J, Hinkins M, Oliver B, Harris SE, Beazley JC, Rutherford AJ, Gosden RG, Lanzendorf SE, Picton HM: Expression of mRNAs for DNA methyltransferases and methyl-CpG-binding proteins in the human female germ line, preimplantation embryos, and embryonic stem cells. Mol Reprod Dev 2004, 67:323-336.
- [62]Kantor B, Makedonski K, Shemer R, Razin A: Expression and localization of components of the histone deacetylases multiprotein repressory complexes in the mouse preimplantation embryo. Gene Expr Patterns 2003, 3:697-702.
- [63]Lin SL, Chang DC, Lin CH, Ying SY, Leu D, Wu DT: Regulation of somatic cell reprogramming through inducible mir-302 expression. Nucleic Acids Res 2011, 39:1054-1065.
- [64]Caballero MI, Hansen J, Leaford D, Pollard S, Hendrich BD: The methyl-CpG binding proteins Mecp2, Mbd2 and Kaiso are dispensable for mouse embryogenesis, but play a redundant function in neural differentiation. PLoS One 2009, 4:e4315.
- [65]Jost KL, Rottach A, Milden M, Bertulat B, Becker A, Wolf P, Sandoval J, Petazzi P, Huertas D, Esteller M, Kremmer E, Leonhardt H, Cardoso MC: Generation and characterization of rat and mouse monoclonal antibodies specific for MeCP2 and their use in X-inactivation studies. PLoS One 2011, 6:e26499.
- [66]Ronneberger O, Baddeley D, Scheipl F, Verveer PJ, Burkhardt H, Cremer C, Fahrmeir L, Cremer T, Joffe B: Spatial quantitative analysis of fluorescently labeled nuclear structures: problems, methods, pitfalls. Chromosome Res 2008, 16:523-562.
- [67]Walter J, Joffe B, Bolzer A, Albiez H, Benedetti PA, Muller S, Speicher MR, Cremer T, Cremer M, Solovei I: Towards many colors in FISH on 3D-preserved interphase nuclei. Cytogenet Genome Res 2006, 114:367-378.
- [68]Szwagierczak A, Bultmann S, Schmidt CS, Spada F, Leonhardt H: Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA. Nucleic Acids Res 2010, 38:e181.
- [69]Laget S, Joulie M, Le Masson F, Sasai N, Christians E, Pradhan S, Roberts RJ, Defossez PA: The human proteins MBD5 and MBD6 associate with heterochromatin but they do not bind methylated DNA. PLoS One 2010, 5:e11982.