Clinical Epigenetics | |
Breast cancer risk and imprinting methylation in blood | |
Paul Haggarty1  Steven D. Heys2  Elizabeth Smyth3  Graham W. Horgan4  Louise Simpson2  Paula Scott1  Gwen Hoad1  Kristina Harrison1  | |
[1] Division of Lifelong Health, Rowett Institute of Nutrition and Health, University of Aberdeen, Greenburn Road, Bucksburn, Aberdeen, UK;Division of Applied Medicine, School of Medicine and Dentistry, University of Aberdeen, University Medical Buildings, Foresterhill, Aberdeen, UK;Aberdeen Royal Infirmary, Ward 308, Foresterhill, Aberdeen, UK;Biomathematics and Statistics Scotland, Aberdeen, UK | |
关键词: Ductal carcinoma in situ; Invasive ductal carcinoma; Breast cancer; Methylation; Imprinting; | |
Others : 1225847 DOI : 10.1186/s13148-015-0125-x |
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received in 2015-06-20, accepted in 2015-08-17, 发布年份 2015 | |
【 摘 要 】
Background
Altered DNA methylation of imprinted genes has been implicated in a range of cancers. Imprinting is established early in development, and some are maintained throughout the life course in multiple tissues, providing a plausible mechanism linking known early life factors to cancer risk. This study investigated methylation status of seven imprinted differentially methylated regions—PLAGL1/ZAC1, H19-ICR1, IGF2-DMR2, KvDMR-ICR2, RB1, SNRPN-DMR1 and PEG3—in blood samples from 189 women with the most common type of invasive breast cancer (invasive ductal carcinoma—IDC), 41 women with in situ breast cancer (ductal carcinoma in situ—DCIS) and 363 matched disease-free controls.
Results
There was no evidence that imprinted gene methylation levels varied with age (between 25 and 87 years old), weight or height. Higher PEG3 methylation was associated with an elevated risk of IDC (odds ratio (OR) 1.065; 95 % confidence interval (CI) 1.002, 1.132; p = 0.042) and DCIS (OR 1.139; 95 % CI 1.027, 1.263; p = 0.013). The effect was stronger when in situ and invasive breast cancer were combined (OR 1.079; 95 % CI 1.020, 1.142; p = 0.008). DCIS breast cancer risk increased with higher KvDMR-ICR2 methylation (OR 1.395; 95 % CI 1.190, 1.635; p < 0.001) and lower PLAGL1/ZAC1 methylation (OR 0.905; 95 % CI 0.833, 0.982; p = 0.017). In a combined model, only KvDMR-ICR2 methylation remained significantly associated.
Conclusions
These findings may help to improve our understanding of the aetiology of breast cancer and the importance of early life factors in particular. Imprinting methylation status also has the potential to contribute to the development of improved screening and treatment strategies for women with, or at risk of, breast cancer.
【 授权许可】
2015 Harrison et al.
【 预 览 】
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Fig. 1. | 59KB | Image | download |
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【 参考文献 】
- [1]Cancer Research UK. http://www.cancerresearchuk.org/health-professional/cancer-statistics/statistics-by-cancertype/breast-cancer webcite
- [2]Cancer Incidence and Mortality Worldwide: IARC CancerBase No. 11. International Agency for Research on Cancer; 2013.. http://globocan.iarc.fr webcite
- [3]Claus EB, Schildkraut JM, Thompson WD, Risch NJ: The genetic attributable risk of breast and ovarian cancer. Cancer 1996, 77(11):2318-2324.
- [4]Locatelli I, Lichtenstein P, Yashin AI: The heritability of breast cancer: a Bayesian correlated frailty model applied to Swedish twins data. Twin Res 2004, 7(2):182-191.
- [5]Cottet V, Touvier M, Fournier A, Touillaud MS, Lafay L, Clavel-Chapelon F, Boutron-Ruault M: Postmenopausal breast cancer risk and dietary patterns in the E3N-EPIC prospective cohort study. Am. J. Epidemiol. 2009, 170(10):1257-1267.
- [6]Wolff MS, Collman GW, Barrett JC, Huff J: Breast cancer and environmental risk factors: epidemiological and experimental findings. Annu. Rev. Pharmacol. Toxicol. 1996, 36(1):573-596.
- [7]Szyf M, Pakneshan P, Rabbani SA: DNA methylation and breast cancer. Biochem. Pharmacol. 2004, 68(6):1187-1197.
- [8]Cheung HH: DNA methylation of cancer genome. Birth Defects Res A Clin Mol Teratol 2009, 87(4):335.
- [9]Reik W: Epigenetic reprogramming in mammalian development. Science 2001, 293(5532):1089.
- [10]Haggarty P, Heys SD: Nutrition and development: short- and long-term consequences for health, ed. In Nutrition and Development: Cancer. Edited by Sanders TAB. West Sussex, UK: Wiley-Blackwell; 2013:164--176
- [11]Heijmans BT, Kremer D, Tobi EW, Boomsma DI, Slagboom PE: Heritable rather than age-related environmental and stochastic factors dominate variation in DNA methylation of the human IGF2/H19 locus. Hum. Mol. Genet. 2007, 16(5):547-554.
- [12]Haggarty P, Hoad G, Campbell DM, Horgan GW, Piyathilake C, McNeill G: Folate in pregnancy and imprinted gene and repeat element methylation in the offspring. Am J Clin Nutr 2013, 97(1):94-99.
- [13]Woodfine K, Huddleston JE, Murrell A: Quantitative analysis of DNA methylation at all human imprinted regions reveals preservation of epigenetic stability in adult somatic tissue. Epigenetics Chromatin 2011, 4(1):1. BioMed Central Full Text
- [14]Coolen MW, Statham AL, Qu W, Campbell MJ, Henders AK, Montgomery GW, Martin NG, Clark SJ: Impact of the genome on the epigenome is manifested in DNA methylation patterns of imprinted regions in monozygotic and dizygotic twins. PLoS One 2011, 6(10):e25590.
- [15]Uribe-Lewis S, Woodfine K, Stojic L, Murrell A: Molecular mechanisms of genomic imprinting and clinical implications for cancer. Expert Rev Mol Med 2011, 13:e2.
- [16]Yuasa Y: DNA methylation in cancer and ageing. Mech. Ageing Dev. 2002, 123(12):1649-1654.
- [17]Feinberg AP, Ohlsson R, Henikoff S: The epigenetic progenitor origin of human cancer. Nat. Rev. Genet. 2006, 7(1):21-33.
- [18]Hu M, Yao J, Cai L, Bachman KE, van den Brûle F, Velculescu V, Polyak K: Distinct epigenetic changes in the stromal cells of breast cancers. Nat. Genet. 2005, 37(8):899-905.
- [19]Slaughter DP, Southwick HW, Smejkal W: Field cancerization in oral stratified squamous epithelium; clinical implications of multicentric origin. Cancer 1953, 6:963-968.
- [20]Xu Z, Bolick SC, DeRoo LA, Weinberg CR, Sandler DP, Taylor JA: Epigenome-wide association study of breast cancer using prospectively collected sister study samples. J. Natl. Cancer Inst. 2013, 105(10):694-700.
- [21]Choi JY: Association between global DNA hypomethylation in leukocytes and risk of breast cancer. Carcinogenesis 2009, 30(11):1889.
- [22]Wu H, Delgado-Cruzata L, Flom JD, Perrin M, Liao Y, Ferris JS, Santella RM, Terry MB: Repetitive element DNA methylation levels in white blood cell DNA from sisters discordant for breast cancer from the New York site of the Breast Cancer Family Registry. Carcinogenesis 2012, 33(10):1946-1952.
- [23]Fleischer T, Edvardsen H, Jovanovic J, Touleimat N, Børresen-Dale A, Tost J, Kristensen VN: DNA methylation and gene expression patterns in breast cancer progression from in situ carcinoma to invasive carcinoma. Epigenetics Chromatin 2013, 6(Suppl 1):18. BioMed Central Full Text
- [24]Fackler MJ: Genome-wide methylation analysis identifies genes specific to breast cancer hormone receptor status and risk of recurrence. Cancer Res. 2011, 71(19):6195.
- [25]Reinius LE, Acevedo N, Joerink M, Pershagen G, Dahlén S, Greco D, Söderhäll C, Scheynius A, Kere J: Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility. PLoS One 2012, 7(7):e41361.
- [26]Adalsteinsson BT, Gudnason H, Aspelund T, Harris TB, Launer LJ, Eiriksdottir G, Smith AV, Gudnason V: Heterogeneity in white blood cells has potential to confound DNA methylation measurements. PLoS One 2012, 7(10):e46705.
- [27]Talens RP, Boomsma DI, Tobi EW, Kremer D, Jukema JW, Willemsen G, Putter H, Slagboom PE, Heijmans BT: Variation, patterns, and temporal stability of DNA methylation: considerations for epigenetic epidemiology. FASEB J. 2010, 24(9):3135-3144.
- [28]Tollefsbol T: Epigenetics in human disease. Massachusetts, USA: Academic Press; 2012.
- [29]Dejeux E, Olaso R, Dousset B, Audebourg A, Gut IG, Terris B, Tost J: Hypermethylation of the IGF2 differentially methylated region 2 is a specific event in insulinomas leading to loss-of-imprinting and overexpression. Endocr Relat Cancer 2009, 16(3):939-952.
- [30]Soubry A, Schildkraut JM, Murtha A, Wang F, Huang Z, Bernal A, Kurtzberg J, Jirtle RL, Murphy SK, Hoyo C: Paternal obesity is associated with IGF2 hypomethylation in newborns: results from a Newborn Epigenetics Study (NEST) cohort. BMC Med 2013, 11:29-7015. BioMed Central Full Text
- [31]Haggarty P, Hoad G, Horgan GW, Campbell DM: DNA methyltransferase candidate polymorphisms, imprinting methylation, and birth outcome. PLoS One 2013, 8(7):e68896.
- [32]Dedeurwaerder S, Defrance M, Calonne E, Denis H, Sotiriou C, Fuks F: Evaluation of the Infinium Methylation 450K technology. Epigenomics 2011, 3(6):771-784.
- [33]Das R, Lee YK, Strogantsev R, Jin S, Lim YC, Ng PY, Lin XM, Chng K, Yeo GS, Ferguson-Smith AC: DNMT1 and AIM1 Imprinting in human placenta revealed through a genome-wide screen for allele-specific DNA methylation. BMC Genomics 2013, 14(1):685. BioMed Central Full Text
- [34]Jaffe AE, Irizarry RA: Accounting for cellular heterogeneity is critical in epigenome-wide association studies. Genome Biol. 2014, 15(2):R31. BioMed Central Full Text
- [35]Murphy SK, Huang Z, Hoyo C: Differentially methylated regions of imprinted genes in prenatal, perinatal and postnatal human tissues. PLoS One 2012, 7(7):e40924.
- [36]Huang JM, Kim J: DNA methylation analysis of the mammalian PEG3 imprinted domain. Gene 2009, 442(1–2):18-25.
- [37]Nye MD, Hoyo C, Huang Z, Vidal AC, Wang F, Overcash F, Smith JS, Vasquez B, Hernandez B, Swai B: Associations between methylation of paternally expressed gene 3 (PEG3), cervical intraepithelial neoplasia and invasive cervical cancer. PLoS One 2013, 8(2):e56325.
- [38]Woodfine K, Huddleston JE, Murrell A: Quantitative analysis of DNA methylation at all human imprinted regions reveals preservation of epigenetic stability in adult somatic tissue. Epigenetics and Chromatin 2011;4(1):1–13.
- [39]Barrow TM, Barault L, Ellsworth RE, Harris HR, Binder AM, Valente AL, Shriver CD, Michels KB: Aberrant methylation of imprinted genes is associated with negative hormone receptor status in invasive breast cancer. International Journal of Cancer 2015
- [40]van Roozendaal C, Gillis A, Klijn J, van Ooijen B, Claassen C, Eggermont A, Henzen-Logmans S, Oosterhuis J, Foekens J, Looijenga L: Loss of imprinting of IGF2 and not H19 in breast cancer, adjacent normal tissue and derived fibroblast cultures. FEBS Lett. 1998, 437(1-2):107-111.
- [41]Bombonati A, Sgroi DC: The molecular pathology of breast cancer progression. J. Pathol. 2011, 223(2):308-318.
- [42]Leonard GD, Swain SM: Ductal carcinoma in situ, complexities and challenges. J. Natl. Cancer Inst. 2004, 96(12):906-920.
- [43]Evans AJ, Pinder SE, Ellis IO, Wilson ARM: Screen detected ductal carcinoma in situ (DCIS): overdiagnosis or an obligate precursor of invasive disease? J. Med. Screen. 2001, 8(3):149-151.
- [44]Independent UK Panel on Breast Cancer Screening: The benefits and harms of breast cancer screening: an independent review Lancet 2012, 380(9855):1778.
- [45]Virnig BA, Tuttle TM, Shamliyan T, Kane RL: Ductal carcinoma in situ of the breast: a systematic review of incidence, treatment, and outcomes. J. Natl. Cancer Inst. 2010, 102(3):170-178.
- [46]Yang X, Karuturi RM, Sun F, Aau M, Yu K, Shao R, Miller LD, Tan PBO, Yu Q: CDKN1C (p57KIP2) is a direct target of EZH2 and suppressed by multiple epigenetic mechanisms in breast cancer cells. PLoS One 2009, 4(4):e5011.
- [47]Xu X, Wang W, Zhang L, Li Y, Tang M, Jiang N, Cai S, Wei L, Jin F, Chen B: Clinical implications of p57KIP2 expression in breast cancer. Asian Pac J Cancer Prev 2012, 13(10):5033-5036.
- [48]Weksberg R, Nishikawa J, Caluseriu O, Fei Y, Shuman C, Wei C, Steele L, Cameron J, Smith A, Ambus I, Li M, Ray PN, Sadowski P, Squire J: Tumor development in the Beckwith–Wiedemann syndrome is associated with a variety of constitutional molecular 11p15 alterations including imprinting defects of KCNQ1OT1. Hum. Mol. Genet. 2001, 10(26):2989-3000.
- [49]Heaphy CM, Griffith JK, Bisoffi M: Mammary field cancerization: molecular evidence and clinical importance. Breast Cancer Res. Treat. 2009, 118(2):229-239.
- [50]Sandovici I, Leppert M, Hawk PR, Suarez A, Linares Y, Sapienza C: Familial aggregation of abnormal methylation of parental alleles at the IGF2/H19 and IGF2R differentially methylated regions. Hum. Mol. Genet. 2003, 12(13):1569-1578.
- [51]Fackler MJ, Lopez Bujanda Z, Umbricht C, Teo WW, Cho S, Zhang Z, Visvanathan K, Jeter S, Argani P, Wang C, Lyman JP, de Brot M, Ingle JN, Boughey J, McGuire K, King TA, Carey LA, Cope L, Wolff AC, Sukumar S: Novel methylated biomarkers and a robust assay to detect circulating tumor DNA in metastatic breast cancer. Cancer Res. 2014, 74(8):2160-2170.
- [52]Ahlgren M, Sørensen T, Wohlfahrt J, Haflidadóttir Á, Holst C, Melbye M: Birth weight and risk of breast cancer in a cohort of 106,504 women. Int. J. Cancer 2003, 107(6):997-1000.
- [53]Forman MR, Cantwell MM, Ronckers C, Zhang Y: Through the looking glass at early-life exposures and breast cancer risk. Cancer Invest 2005, 23(7):609-624.
- [54]De Stavola BL, Hardy R, Kuh D, dos Santos SI, Wadsworth M, Swerdlow AJ: Birth weight, childhood growth and risk of breast cancer in a British cohort. Br. J. Cancer 2000, 83(7):964.
- [55]Okasha M, McCarron P, Gunnell D, Smith GD: Exposures in childhood, adolescence and early adulthood and breast cancer risk: a systematic review of the literature. Breast Cancer Res. Treat. 2003, 78(2):223-276.
- [56]dos Santos SI, De Stavola B, McCormack V: Birth size and breast cancer risk: re-analysis of individual participant data from 32 studies. PLoS Med. 2008, 5(9):e193.
- [57]Azzi S, Sas TC, Koudou Y, Le Bouc Y, Souberbielle J, Dargent-Molina P, et al. Degree of methylation of ZAC1 (PLAGL1) is associated with prenatal and post-natal growth in healthy infants of the EDEN mother child cohort. Epigenetics. 2013;9(3).
- [58]Haggarty P: Nutrition and the epigenome. Prog. Mol. Biol. Transl. Sci. 2012, 108:427-446.
- [59]Elston C, Ellis I: Pathological prognostic factors in breast cancer. I. The value of histological grade in breast cancer: experience from a large study with long‐term follow‐up. Histopathology 1991, 19(5):403-410.
- [60]Bourque DK, Avila L, Peñaherrera M, von Dadelszen P, Robinson WP: Decreased placental methylation at the H19/IGF2 imprinting control region is associated with normotensive intrauterine growth restriction but not preeclampsia. Placenta 2010, 31(3):197-202.
- [61]Dupont J, Tost J, Jammes H, Gut IG: De novo quantitative bisulfite sequencing using the pyrosequencing technology. Anal. Biochem. 2004, 333(1):119-127.
- [62]White HE, Durston VJ, Harvey JF, Cross NCP: Quantitative analysis of SRNPN gene methylation by pyrosequencing as a diagnostic test for Prader-Willi syndrome and Angelman syndrome. Clin. Chem. 2006, 52(6):1005-1013.
- [63]Feng W, Marquez RT, Lu Z, Liu J, Lu KH, Issa J-J, Fishman DM, Yu Y, Bast RC Jr: Imprinted tumor suppressor genes ARHI and PEG3 are the most frequently down-regulated in human ovarian cancers by loss of heterozygosity and promoter methylation. Cancer 2008, 112(7):1489-1502.