期刊论文详细信息
BMC Medical Genomics
Post-weaning selenium and folate supplementation affects gene and protein expression and global DNA methylation in mice fed high-fat diets
Matthew PG Barnett4  William A Laing1  Di T Brewster1  Janine M Cooney3  Warren C McNabb5  Nicole C Roy2  Wayne Young4  Shalome A Bassett4  Emma N Bermingham4 
[1]Biological Chemistry & Bioactives, Food Innovation, Plant & Food Research Mt Albert, Auckland 1025, New Zealand
[2]Riddet Institute, Massey University, Palmerston North 4442, New Zealand
[3]Biological Chemistry & Bioactives, Food Innovation, Plant & Food Research Ruakura, Hamilton 3240, New Zealand
[4]Food Nutrition & Health Team, Food & Bio-based Products Group, AgResearch Grasslands, Palmerston North 4442, New Zealand
[5]AgResearch Grasslands, Palmerston North, 4442 New Zealand
关键词: High fat;    Selenium;    Folate;    Proteomics;    2D-DIGE;    Microarray analysis;    Epigenetic;   
Others  :  1121164
DOI  :  10.1186/1755-8794-6-7
 received in 2012-06-11, accepted in 2013-02-18,  发布年份 2013
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【 摘 要 】

Background

Consumption of high-fat diets has negative impacts on health and well-being, some of which may be epigenetically regulated. Selenium and folate are two compounds which influence epigenetic mechanisms. We investigated the hypothesis that post-weaning supplementation with adequate levels of selenium and folate in offspring of female mice fed a high-fat, low selenium and folate diet during gestation and lactation will lead to epigenetic changes of potential importance for long-term health.

Methods

Female offspring of mothers fed the experimental diet were either maintained on this diet (HF-low-low), or weaned onto a high-fat diet with sufficient levels of selenium and folate (HF-low-suf), for 8 weeks. Gene and protein expression, DNA methylation, and histone modifications were measured in colon and liver of female offspring.

Results

Adequate levels of selenium and folate post-weaning affected gene expression in colon and liver of offspring, including decreasing Slc2a4 gene expression. Protein expression was only altered in the liver. There was no effect of adequate levels of selenium and folate on global histone modifications in the liver. Global liver DNA methylation was decreased in mice switched to adequate levels of selenium and folate, but there was no effect on methylation of specific CpG sites within the Slc2a4 gene in liver.

Conclusions

Post-weaning supplementation with adequate levels of selenium and folate in female offspring of mice fed high-fat diets inadequate in selenium and folate during gestation and lactation can alter global DNA methylation in liver. This may be one factor through which the negative effects of a poor diet during early life can be ameliorated. Further research is required to establish what role epigenetic changes play in mediating observed changes in gene and protein expression, and the relevance of these changes to health.

【 授权许可】

   
2013 Bermingham et al; licensee BioMed Central Ltd.

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【 参考文献 】
  • [1]Gluckman PD, Lillycrop KA, Vickers MH, Pleasants AB, Phillips ES, Beedle AS, Burdge GC, Hanson MA: Metabolic plasticity during mammalian development is directionally dependent on early nutritional status. Proc Natl Acad Sci USA 2007, 104(31):12796-12800.
  • [2]Martin-Subero JI: How epigenomics brings phenotype into being. Pediatr Endocrinol Rev 2011, 9(Suppl 1):506-510.
  • [3]Migliore L, Coppede F: Genetics, environmental factors and the emerging role of epigenetics in neurodegenerative diseases. Mutat Res 2009, 667(1–2):82-97.
  • [4]Quintero-Ronderos P, Montoya-Ortiz G: Epigenetics and autoimmune diseases. Autoimmune Dis 2012, 2012:593720.
  • [5]Cooney CA, Dave AA, Wolff GL: Maternal methyl supplements in mice affect epigenetic variation and DNA methylation of offspring. J Nutr 2002, 132(8):2393S-2400S.
  • [6]Wolff GL, Kodell RL, Moore SR, Cooney CA: Maternal epigenetics and methyl supplements affect agouti gene expression in Avy/a mice. FASEB J 1998, 12(11):949-957.
  • [7]Katada S, Imhof A, Sassone-Corsi P: Connecting threads: epigenetics and metabolism. Cell 2012, 148(1–2):24-28.
  • [8]Li CC, Cropley JE, Cowley MJ, Preiss T, Martin DI, Suter CM: A sustained dietary change increases epigenetic variation in isogenic mice. PLoS Genet 2011, 7(4):e1001380.
  • [9]Barnett MPG, Bassett SA, Bermingham EN: Epigenetics – what role could this play in functional foods and personalized nutrition? In Nutrigenetics and nutrigenomics in functional foods and personalised nutrition. Edited by Ferguson LR. Kentucky: CRC Press; 2012. (accepted). ISBN 9781439876800
  • [10]Mathers JC: Session 2: Personalised Nutrition: Epigenomics: a basis for understanding individual differences? Proc Nutr Soc 2008, 67:390-394.
  • [11]Cordain L, Eaton SB, Sebastian A, Mann N, Lindeberg S, Watkins BA, O’Keefe JH, Brand-Miller J: Origins and evolution of the western diet: health implications for the 21st century. Am J Clin Nutr 2005, 81:341-354.
  • [12]McCann JC, Ames BN: Vitamin K, an example of triage theory: is micronutrient inadequacy linked to diseases of aging? Am J Clin Nutr 2009, 90(4):889-907.
  • [13]Thomson CD, Robinson MF: The changing selenium status of New Zealand residents. Eur J Clin Nutr 1996, 50(2):107-114.
  • [14]Esworthy RS, Yang L, Frankel PH, Chu FF: Epithelium-specific glutathione peroxidase, Gpx2, is involved in the prevention of intestinal inflammation in selenium-deficient mice. J Nutr 2005, 135(4):740-745.
  • [15]Russell D, Parnell W, Wilson N: NZ Food: NZ People. Key results of the, 1997 National Nutrition Survey. Wellington, NZ: Ministry of Health; 1997. 1999
  • [16]Davis CD, Uthus EO: DNA methylation, cancer susceptibility, and nutrient interactions. Exp Biol Med 2004, 229:988-995.
  • [17]Barnett M, Bermingham E, McNabb W, Bassett S, Armstrong K, Rounce J, Roy N: Investigating micronutrients and epigenetic mechanisms in relation to inflammatory bowel disease. Mutat Res 2010, 690(1–2):71-80.
  • [18]Waterland RA, Jirtle RL: Transposable elements: targets for early nutritional effects on epigenetic gene regulation. Mol Cell Biol 2003, 23(15):5293-5300.
  • [19]Waterland RA: Epigenetic mechanisms and gastrointestinal development. J Pediatr 2006, 149(5 Suppl):S137-142.
  • [20]Lu Q, Qiu X, Hu N, Wen H, Su Y, Richardson B: Epigenetics, disease, and theraputic interventions. Ageing Res Rev 2006, 5:449-467.
  • [21]Adcock IM, Lee KY: Abnormal histone acetylase and deacetylase expression and function in lung inflammation. Inflammation Res 2006, 55:311-321.
  • [22]Lu Q, Qiu X, Hu N, Wen H, Su Y, Richardson BC: Epigenetics, disease, and therapeutic interventions. Ageing Res Rev 2006, 5(4):449-467.
  • [23]Cheung P, Lau P: Epigenetic regulation by histone methylation and histone variants. Mol Endocrinol 2005, 19:563-573.
  • [24]Radford EJ, Isganaitis E, Jimenez-Chillaron J, Schroeder J, Molla M, Andrews S, Didier N, Charalambous M, McEwen K, Marazzi G: An unbiased assessment of the role of imprinted genes in an intergenerational model of developmental programming. PLoS Genet 2012, 8(4):e1002605.
  • [25]Ruegg J, Cai W, Karimi M, Kiss NB, Swedenborg E, Larsson C, Ekstrom TJ, Pongratz I: Epigenetic regulation of glucose transporter 4 by estrogen receptor beta. Mol Endocrinol 2011, 25(12):2017-2028.
  • [26]Yokomori N, Tawata M, Onaya T: DNA demethylation during the differentiation of 3 T3-L1 cells affects the expression of the mouse GLUT4 gene. Diabetes 1999, 48(4):685-690.
  • [27]Fagan A, Culhane AC, Higgins DG: A multivariate analysis approach to the integration of proteomic and gene expression data. Proteomics 2007, 7(13):2162-2171.
  • [28]Ma L, Steindal AE, Juzeniene A, Iani V, Moan J: The effect of folic acid on porphyrin synthesis in tumors and normal skin of mice treated with 5-aminolevulinic acid or methyl 5-aminolevulinate. Photochem Photobiol Sci 2006, 5(8):755-759.
  • [29]Iyer R, Tomar SK: Dietary effect of folate-rich fermented milk produced by Streptococcus thermophilus strains on hemoglobin level. Nutrition 2011, 27(10):994-997.
  • [30]Kuhbacher M, Bartel J, Hoppe B, Alber D, Bukalis G, Brauer AU, Behne D, Kyriakopoulos A: The brain selenoproteome: priorities in the hierarchy and different levels of selenium homeostasis in the brain of selenium-deficient rats. J Neurochem 2009, 110(1):133-142.
  • [31]Chanson A, Sayd T, Rock E, Chambon C, Sante-Lhoutellier V: Potier de Courcy G, Brachet P: Proteomic analysis reveals changes in the liver protein pattern of rats exposed to dietary folate deficiency. J Nutr 2005, 135(11):2524-2529.
  • [32]Schaible TD, Harris RA, Dowd SE, Smith CW, Kellermayer R: Maternal methyl-donor supplementation induces prolonged murine offspring colitis susceptibility in association with mucosal epigenetic and microbiomic changes. Hum Mol Genet 2011, 20(9):1687-1696.
  • [33]Kim KC, Jang H, Sauer J, Zimmerly EM, Liu Z, Chanson A, Smith DE, Friso S, Choi SW: Folate supplementation differently affects uracil content in DNA in the mouse colon and liver. Br J Nutr 2011, 105(5):688-693.
  • [34]Davis C, Uthus E: Dietary folate and selenium affect dimethylhydrazine-induced aberrant crypt formation, global DNA methylation and one-carbon metabolism in rats. J Nutr 2003, 133:2907-2914.
  • [35]Zeng H, Yan L, Cheng W-H, Uthus EO: Dietary Selenomethionine Increases Exon-Specific DNA Methylation of the p53 Gene in Rat Liver and Colon Mucosa. J Nutr 2011, 141(8):1464-1468.
  • [36]Singal R, Ginder GD: DNA Methylation. Blood 1999, 93(12):4059-4070.
  • [37]Ly A, Hoyt L, Crowell J, Kim YI: Folate and DNA Methylation. Antioxid Redox Signal 2012, 17(2):302-326.
  • [38]Boeke CE, Baccarelli A, Kleinman KP, Burris HH, Litonjua AA, Rifas-Shiman SL, Tarantini L, Gillman M: Gestational intake of methyl donors and global LINE-1 DNA methylation in maternal and cord blood: prospective results from a folate-replete population. Epigenetics 2012, 7(3):253-260.
  • [39]McKay JA, Williams EA, Mathers JC: Effect of maternal and post-weaning folate supply on gene-specific DNA methylation in the small intestine of weaning and adult apc and wild type mice. Front Genet 2011, 2:23.
  • [40]McKay JA, Wong YK, Relton CL, Ford D, Mathers JC: Maternal folate supply and sex influence gene-specific DNA methylation in the fetal gut. Mol Nutr Food Res 2011, 55(11):1717-1723.
  • [41]Widiker S, Karst S, Wagener A, Brockmann GA: High-fat diet leads to a decreased methylation of the Mc4r gene in the obese BFMI and the lean B6 mouse lines. J Appl Genet 2010, 51(2):193-197.
  • [42]Godler DE, Slater HR, Bui QM, Ono M, Gehling F, Francis D, Amor DJ, Hopper JL, Hagerman R, Loesch DZ: FMR1 intron 1 methylation predicts FMRP expression in blood of female carriers of expanded FMR1 alleles. J Mol Diagn 2011, 13(5):528-536.
  • [43]Mostovich LA, Prudnikova TY, Kondratov AG, Loginova D, Vavilov PV, Rykova VI, Sidorov SV, Pavlova TV, Kashuba VI, Zabarovsky ER: Integrin alpha9 (ITGA9) expression and epigenetic silencing in human breast tumors. Cell Adh Migr 2011, 5(5):395-401.
  • [44]Xue Q, Zhou YF, Zhu SN, Bulun SE: Hypermethylation of the CpG island spanning from exon II to intron III is associated with steroidogenic factor 1 expression in stromal cells of endometriosis. Reprod Sci 2011, 18(11):1080-1084.
  • [45]Zheng S, Rollet M, Pan YX: Protein restriction during gestation alters histone modifications at the glucose transporter 4 (GLUT4) promoter region and induces GLUT4 expression in skeletal muscle of female rat offspring. J Nutr Biochem 2011. Nov 11. [Epub ahead of print]
  • [46]Xiang N, Zhao R, Song G, Zhong W: Selenite reactivates silenced genes by modifying DNA methylation and histones in prostate cancer cells. Carcinogenesis 2008, 29(11):2175-2181.
  • [47]Pogribny IP, Tryndyak VP, Bagnyukova TV, Melnyk S, Montgomery B, Ross SA, Latendresse JR, Rusyn I, Beland FA: Hepatic epigenetic phenotype predetermines individual susceptibility to hepatic steatosis in mice fed a lipogenic methyl-deficient diet. J Hepatol 2009, 51(1):176-186.
  • [48]Dobosy JR, Fu VX, Desotelle JA, Srinivasan R, Kenowski ML, Almassi N, Weindruch R, Svaren J, Jarrard DF: A methyl-deficient diet modifies histone methylation and alters Igf2 and H19 repression in the prostate. Prostate 2008, 68(11):1187-1195.
  • [49]McKay JA, Waltham KJ, Williams EA, Mathers JC: Folate depletion during pregnancy and lactation reduces genomic DNA methylation in murine adult offspring. Genes Nutr 2011, 6(2):189-196.
  • [50]Hurt HD, Cary EE, Visek WJ: Growth, reproduction, and tissue concentrations of selenium in the selenium-depleted rat. J Nutr 1971, 101(6):761-766.
  • [51]Oh SH, Park KK, Kim SY, Lee KJ, Lee YH: Evaluation of chemopreventive effect of dietary selenium-rich egg on mouse skin tumor induced by 2'-(4-nitrophenoxy)oxirane and 12-O-tetradecanoylphorbol-13-acetate. Carcinogenesis 1995, 16(12):2995-2998.
  • [52]Martin H, Comeskey D: Folate measurement in mammalian tissues by fluorescence polarization. Pteridines 2011, 22:105-110.
  • [53]Joseph SB, McKilligin E, Pei L, Watson MA, Collins AR, Laffitte BA, Chen M, Noh G, Goodman J, Hagger GN: Synthetic LXR ligand inhibits the development of atherosclerosis in mice. Proc Natl Acad Sci USA 2002, 99(11):7604-7609.
  • [54]Bradley MN, Hong C, Chen M, Joseph SB, Wilpitz DC, Wang X, Lusis AJ, Collins AR, Hsueh WA, Collins JL: Ligand activation of LXRβ reverses atherosclerosis and cellular cholesterol overload in mice lacking LXRα and apoE. J Clin Invest 2007, 117:2337-2346.
  • [55]Ghoshal K, Li X, Datta J, Bai S, Pogribny I, Poribnh M, Huang Y, Young D, Jacob S: A folate- and methyl-deficient diet alters the expression of DNA methyltransferases and methyl CpG binding proteins invlolved in epigenetic gene silencing in livers of F344 rats. J Nutr 2006, 136:1522-1527.
  • [56]Thompson KM, Haibach H, Evenson JK, Sunde RA: Liver Selenium and Testis Phospholipid Hydroperoxide Glutathione Peroxidase Are Associated with Growth during Selenium Repletion of Second-Generation Se-Deficient Male Rats. J Nutr 1998, 128:1289-1295.
  • [57]Watkins AJ, Wilkins A, Cunningham C, Perry VH, Seet MJ, Osmond C, Eckert JJ, Torrens C, Cagampang FRA, Cleal J: Low protein diet fed exclusively during mouse oocyte maturation leads to behavioural and cardiovascular abnormalities in offspring. J Physiol 2008, 586(8):2231-2244.
  • [58]Sarmento OF, Digilio LC, Wang Y, Perlin J, Herr JC, Allis CD, Coonrod SA: Dynamic alterations of specific histone modifications during early murine development. J Cell Sci 2004, 117(19):4449-4459.
  • [59]Park EI, Paisley EA, Mangian HJ, Swartz DA, Wu M, O’Morchoe PJ, Behr SR, Visek WJ, Kaput J: Lipid Level and Type Alter Stearoyl CoA Desaturase mRNA Abundance Differently in Mice with Distinct Susceptibilities to Diet-Influenced Diseases. J Nutr 1997, 127(4):566-573.
  • [60]Knoch B, Barnett MPG, Zhu S, Park ZA, Nones K, Dommels YEM, Knowles SO, McNabb WC, Roy NC: Genome-wide analysis of dietary eicosapentaenoic acid- and oleic acid-induced modulation of colon inflammation in interleukin-10 gene-deficient mice. J Nutrigenet Nutrigenomics 2009, 2:9-28.
  • [61]Roy NC, Barnett MPG, Knoch B, Dommels YEM, McNabb WC: Nutrigenomics applied to an animal model of Inflammatory Bowel Diseases: transcriptomic analysis of the effects of eicosapentaenoic acid- and arachidonic acid-enriched diets. Mutat Res 2007, 622(1–2):103-116.
  • [62]Smyth GK: Limma: linear models for microarray data. In Bioinformatics and Computational Biology Solutions using R and Bioconductor. Edited by Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W. New York: Springer; 2005:397-420.
  • [63]Falcon S, Gentleman R: Using GOstats to test gene lists for GO term association. Bioinformatics 2007, 23(2):257-258.
  • [64]Edgar R, Domrachev M, Lash AE: Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002, 30(1):207-210.
  • [65]Knoch B, Barnett MP, Cooney J, McNabb WC, Barraclough D, Laing W, Roy NC: Dietary oleic acid as a control fatty acid for polyunsaturated fatty acid intervention studies: a transcriptomics and proteomics investigation using interleukin-10 gene-deficient mice. Biotechnol J 2010, 5(11):1226-1240.
  • [66]Cooney JM, Barnett MP, Brewster D, Knoch B, McNabb WC, Laing WA, Roy NC: Proteomic analysis of colon tissue from interleukin-10 gene-deficient mice fed polyunsaturated Fatty acids with comparison to transcriptomic analysis. J Proteome Res 2012, 11(2):1065-1077.
  • [67]Eng JK, McCormack AL, Yates Iii JR: An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Am Soc Mass Spectrom 1994, 5(11):976-989.
  • [68]Yates JR 3rd, Eng JK, McCormack AL, Schieltz D: Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. Anal Chem 1995, 67(8):1426-1436.
  • [69]Armstrong KM, Bermingham EN, Bassett SA, Treloar BP, Roy NC, Barnett MP: Global DNA methylation measurement by HPLC using low amounts of DNA. Biotechnol J 2011, 6(1):113-117.
  • [70]Glauben R, Batra A, Stroh T, Erben U, Fedke I, Lehr HA, Leoni F, Mascagni P, Dinarello CA, Zeitz M: Histone deacetylases: novel targets for prevention of colitis-associated cancer in mice. Gut 2008, 57(5):613-622.
  • [71]Kis A, Yellon DM, Baxter GF: Role of nuclear factor-κB activation in acute ischaemia-reperfusion injury in myocardium. Br J Pharmacol 2003, 138:894-900.
  • [72]Ehrich M, Nelson MR, Stanssens P, Zabeau M, Liloglou T, Xinarianos G, Cantor CR, Field JK, van den Boom D: Quantitative high-throughput analysis of DNA methylation patterns by base-specific cleavage and mass spectrometry. Proc Natl Acad Sci USA 2005, 102:15785-15790.
  • [73]Barnett MP, McNabb WC, Cookson AL, Zhu S, Davy M, Knoch B, Nones K, Hodgkinson AJ, Roy NC: Changes in colon gene expression associated with increased colon inflammation in interleukin-10 gene-deficient mice inoculated with Enterococcus species. BMC Immunol 2010, 11:39. BioMed Central Full Text
  • [74]Knoch B, Barnett MP, McNabb WC, Zhu S, Park ZA, Khan A, Roy NC: Dietary arachidonic acid-mediated effects on colon inflammation using transcriptome analysis. Mol Nutr Food Res 2010, 54(Suppl 1):S62-74.
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