BMC Microbiology | |
Cloning, expression and characterization of an aryl-alcohol dehydrogenase from the white-rot fungus Phanerochaete chrysosporium strain BKM-F-1767 | |
Gustavo M de Billerbeck2  Jean Marie François1  Dong-Dong Yang1  | |
[1] CNRS, UMR5504, Toulouse, F-31400, France;INP-ENSAT, Avenue de l’Agrobiopole, Castanet-Tolosan Cedex, F-31326, France | |
关键词: Phanerochaete chrysosporium; Fragrances; Flavours; Lignin; Lignocellulosic hydrolysates; Aryl-alcohol dehydrogenase; AAD; | |
Others : 1221845 DOI : 10.1186/1471-2180-12-126 |
|
received in 2012-02-01, accepted in 2012-04-16, 发布年份 2012 | |
【 摘 要 】
Background
The white-rot fungus Phanerochaete chrysosporium is among the small group of fungi that can degrade lignin to carbon dioxide while leaving the crystalline cellulose untouched. The efficient lignin oxidation system of this fungus requires cyclic redox reactions involving the reduction of aryl-aldehydes to the corresponding alcohols by aryl-alcohol dehydrogenase. However, the biochemical properties of this enzyme have not been extensively studied. These are of most interest for the design of metabolic engineering/synthetic biology strategies in the field of biotechnological applications of this enzyme.
Results
We report here the cloning of an aryl-alcohol dehydrogenase cDNA from the white-rot fungus Phanerochaete chrysosporium, its expression in Escherichia coli and the biochemical characterization of the encoded GST and His6 tagged protein. The purified recombinant enzyme showed optimal activity at 37°C and at pH 6.4 for the reduction of aryl- and linear aldehydes with NADPH as coenzyme. NADH could also be the electron donor, while having a higher Km (220 μM) compared to that of NADPH (39 μM). The purified recombinant enzyme was found to be active in the reduction of more than 20 different aryl- and linear aldehydes showing highest specificity for mono- and dimethoxylated Benzaldehyde at positions 3, 4, 3,4 and 3,5. The enzyme was also capable of oxidizing aryl-alcohols with NADP + at 30°C and an optimum pH of 10.3 but with 15 to 100-fold lower catalytic efficiency than for the reduction reaction.
Conclusions
In this work, we have characterized the biochemical properties of an aryl-alcohol dehydrogenase from the white-rot fungus Phanerochaete chrysosporium. We show that this enzyme functions in the reductive sense under physiological conditions and that it displays relatively large substrate specificity with highest activity towards the natural compound Veratraldehyde.
【 授权许可】
2012 Yang et al.; licensee BioMed Central Ltd.
【 预 览 】
Files | Size | Format | View |
---|---|---|---|
20150804025128946.pdf | 629KB | download | |
Figure 5. | 30KB | Image | download |
Figure 4. | 37KB | Image | download |
Figure 3. | 22KB | Image | download |
Figure 2. | 78KB | Image | download |
Figure 1. | 18KB | Image | download |
【 图 表 】
Figure 1.
Figure 2.
Figure 3.
Figure 4.
Figure 5.
【 参考文献 】
- [1]Boerjan W, Ralph J, Baucher M: Lignin biosynthesis. Annu Rev Plant Biol 2003, 54:519-546.
- [2]Martinez D, Larrondo LF, Putnam N, Gelpke MDS, Huang K, Chapman J, Helfenbein KG, Ramaiya P, Detter JC, Larimer F, Coutinho PM, Henrissat B, Berka R, Cullen D, Rokhsar D: Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nat Biotechnol 2004, 22:695-700.
- [3]Glenn JK, Gold MH: Purification and characterization of an extracellular Mn(II)- dependent peroxidase from the lignin-degrading basidiomycete. Phanerochaete chrysosporium. Arch Biochem Biophys 1985, 242:329-341.
- [4]Tien M, Kirk TK: Lignin-Degrading Enzyme from the Hymenomycete Phanerochaete chrysosporium Burds. Science 1983, 221:661-663.
- [5]Banci L, Ciofi-Baffoni S, Tien M: Lignin and Mn peroxidase-catalyzed oxidation of phenolic lignin oligomers. Biochemistry 1999, 38:3205-3210.
- [6]Kersten P, Cullen D: Extracellular oxidative systems of the lignin-degrading Basidiomycete Phanerochaete chrysosporium. Fungal Genet Biol 2007, 44:77-87.
- [7]Kersten PJ, Kirk TK: Involvement of a new enzyme, glyoxal oxidase, in extracellular H2O2 production by Phanerochaete chrysosporium. J Bacteriol 1987, 169:2195-2201.
- [8]Kersten PJ: Glyoxal oxidase of Phanerochaete chrysosporium: its characterization and activation by lignin peroxidase. Proc Natl Acad Sci U S A 1990, 87:2936-2940.
- [9]Whittaker MM, Kersten PJ, Cullen D, Whittaker JW: Identification of catalytic residues in glyoxal oxidase by targeted mutagenesis. J Biol Chem 1999, 274:36226-36232.
- [10]Varela E, Guillén F, Martínez AT, Martínez MJ: Expression of Pleurotus eryngii aryl- alcohol oxidase in Aspergillus nidulans: purification and characterization of the recombinant enzyme. Biochim Biophys Acta 2001, 1546:107-113.
- [11]Harvey PJ, Schoemaker HE, Palmer JM: Veratryl alcohol as a mediator and the role of radical cations in lignin biodegradation by Phanerochaete chrysosporium. FEBS Lett 1986, 195:242-246.
- [12]Jensen KA, Evans KM, Kirk TK, Hammel KE: Biosynthetic Pathway for Veratryl Alcohol in the Ligninolytic Fungus Phanerochaete chrysosporium. Appl Environ Microbiol 1994, 60:709-714.
- [13]Guillén F, Martínez AT, Martínez MJ, Evans CS: Hydrogen-peroxide-producing system of Pleurotus eryngii involving the extracellular enzyme aryl-alcohol oxidase. Appl Microbiol Biotechnol 1994, 41:465-470.
- [14]Guillén F, Evans CS: Anisaldehyde and Veratraldehyde Acting as Redox Cycling Agents for H2O2 Production by Pleurotus eryngii. Appl Environ Microbiol 1994, 60:2811-2817.
- [15]Gutiérrez A, Caramelo L, Prieto A, Martínez MJ, Martínez AT: Anisaldehyde production and aryl-alcohol oxidase and dehydrogenase activities in ligninolytic fungi of the genus Pleurotus. Appl Environ Microbiol 1994, 60:1783-1788.
- [16]Varela E, Jesús Martínez M, Martínez AT: Aryl-alcohol oxidase protein sequence: a comparison with glucose oxidase and other FAD oxidoreductases. Biochim Biophys Acta 2000, 1481:202-208.
- [17]Martínez AT, Speranza M, Ruiz-Dueñas FJ, Ferreira P, Camarero S, Guillén F, Martínez MJ, Gutiérrez A, del Río JC: Biodegradation of lignocellulosics: microbial, chemical, and enzymatic aspects of the fungal attack of lignin. Int Microbiol 2005, 8:195-204.
- [18]Ambert-Balay K, Fuchs SM, Tien M: Identification of the veratryl alcohol binding site in lignin peroxidase by site-directed mutagenesis. Biochem Biophys Res Commun 1998, 251:283-286.
- [19]Muheim A, Waldner R, Sanglard D, Reiser J, Schoemaker HE, Leisola MS: Purification and properties of an aryl-alcohol dehydrogenase from the white-rot fungus Phanerochaete chrysosporium. Eur J Biochem 1991, 195:369-375.
- [20]Reiser J, Muheim A, Hardegger M, Frank G, Fiechter A: Aryl-alcohol dehydrogenase from the white-rot fungus Phanerochaete chrysosporium. Gene cloning, sequence analysis, expression, and purification of the recombinant enzyme. J Biol Chem 199, 269:28152-28159.
- [21]Phanerochaete chrysosporium v2.0 - Home. [ http://genome.jgi- psf.org/Phchr1/Phchr1.home.html webcite]
- [22]Almeida JR, Modig T, Petersson A, Hähn-Hägerdal B, Lidén G, Gorwa-Grauslund MF: Increased tolerance and conversion of inhibitors in lignocellulosic hydrolysates by Saccharomyces cerevisiae. J Chem Technol Biotechnol 2007, 82:340-349.
- [23]Frohman MA, Dush MK, Martin GR: Rapid Production of Full-Length cDNAs from Rare Transcripts: Amplification Using a Single Gene-Specific Oligonucleotide Primer. PNAS 1988, 85:8998-9002.
- [24]Frohman MA: On Beyond Classic RACE (rapid Amplification of cDNA Ends). Genome Res 1994, 4:S40-S58.
- [25]Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J, Heger A, Holm L, Sonnhammer ELL, Eddy SR, Bateman A, Finn RD: The Pfam protein families database. Nucleic Acids Res 2011.
- [26]Pfam: Home page. [ http://pfam.sanger.ac.uk/ webcite]
- [27]Hyndman D, Bauman DR, Heredia VV, Penning TM: The aldo-keto reductase superfamily homepage. Chem Biol Interact 2003, 143–144:621-631.
- [28]Drury JE, Hyndman D, Jin Y, Penning TM: The Aldo-Keto Reductase Superfamily Homepage: 2006 Update. In Enzymology and Molecular Biology of Carbonyl Metabolism. Edited by Weiner H, Maser E, Lindahl R, Plapp B. Purdue University Press; 2007.
- [29]AKR Superfamily. [ http://www.med.upenn.edu/akr/ webcite]
- [30]Davidson WS, Flynn TG: Kinetics and mechanism of action of aldehyde reductase from pig kidney. Biochem J 1979, 177:595-601.
- [31]Grimshaw CE, Shahbaz M, Putney CG: Mechanistic basis for nonlinear kinetics of aldehyde reduction catalyzed by aldose reductase. Biochemistry 1990, 29:9947-9955.
- [32]Askonas LJ, Ricigliano JW, Penning TM: The kinetic mechanism catalysed by homogeneous rat liver 3 alpha-hydroxysteroid dehydrogenase. Evidence for binary and ternary dead-end complexes containing non-steroidal anti-inflammatory drugs. Biochem J 1991, 278(Pt 3):835-841.
- [33]Yoshida M, Kuroki Y, Kobayashi E, Tamaoki B: Kinetic mechanism of reduction of testosterone by hepatic 5 beta-reductase of chicken and inhibition of the reductase activity by a secosteroid, an azasteroid and glycyrrhetinic acid. J Steroid Biochem Mol Biol 1992, 41:29-36.
- [34]Jez JM, Bennett MJ, Schlegel BP, Lewis M, Penning TM: Comparative anatomy of the aldo-keto reductase superfamily. Biochem J 1997, 326(Pt 3):625-636.
- [35]Larroy C, Fernández MR, González E, Parés X, Biosca JA: Characterization of the Saccharomyces cerevisiae YMR318C (ADH6) gene product as a broad specificity NADPH-dependent alcohol dehydrogenase: relevance in aldehyde reduction. Biochem J 2002, 361:163-172.
- [36]Larroy C, Parés X, Biosca JA: Characterization of a Saccharomyces cerevisiae NADP(H)-dependent alcohol dehydrogenase (ADHVII), a member of the cinnamyl alcohol dehydrogenase family. Eur J Biochem 2002, 269:5738-5745.
- [37]Larroy C, Rosario Fernández M, González E, Parés X, Biosca JA: Properties and functional significance of Saccharomyces cerevisiae ADHVI. Chem Biol Interact 2003, 143–144:229-238.
- [38]Bradford MM: A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 1976, 72:248-254.
- [39]Waldner R, Leisola MSA, Fiechter A: Comparison of ligninolytic activities of selected white-rot fungi. Appl Microbiol Biotechnol 1988, 29:400-407.
- [40]Janshekar H, Haltmeier T, Brown C: Fungal degradation of pine and straw alkali lignins. Eur J Appl Microbiol Biotechnol 1982, 14:174-181.
- [41]Kirk TK, Schultz E, Connors WJ, Lorenz LF, Zeikus JG: Influence of culture parameters on lignin metabolism by Phanerochaete chrysosporium. Arch Microbiol 1978, 117:277-285.