期刊论文详细信息
BMC Microbiology
Factors regulated by interferon gamma and hypoxia-inducible factor 1A contribute to responses that protect mice from Coccidioides immitis infection
Joshua Fierer1  Theo N Kirkland2  Akul Singhania3  Suganya Viriyakosol3  Lorraine Walls3  Jin X Zhang3  Christopher H Woelk1 
[1] Department of Medicine, University of California San Diego, La Jolla, California, 92093, USA;Department of Pathology, University of California San Diego, La Jolla, California, 92093, USA;Veterans Affairs San Diego Healthcare System, Mail Code 9111-F, San Diego, California, 92161, USA
关键词: HIF1A;    Interferon;    Innate immunity;    Gene expression;    Coccidioidomycosis;   
Others  :  1221736
DOI  :  10.1186/1471-2180-12-218
 received in 2012-01-09, accepted in 2012-07-20,  发布年份 2012
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【 摘 要 】

Background

Coccidioidomycosis results from airborne infections caused by either Coccidioides immitis orC. posadasii. Both are pathogenic fungi that live in desert soil in the New World and can infect normal hosts, but most infections are self-limited. Disseminated infections occur in approximately 5% of cases and may prove fatal. Mouse models of the disease have identified strains that are resistant (e.g. DBA/2) or susceptible (e.g. C57BL/6) to these pathogens. However, the genetic and immunological basis for this difference has not been fully characterized.

Results

Microarray technology was used to identify genes that were differentially expressed in lung tissue between resistant DBA/2 and sensitive C57BL/6 mice after infection with C. immitis. Differentially expressed genes were mapped onto biological pathways, gene ontologies, and protein interaction networks, which revealed that innate immune responses mediated by Type II interferon (i.e., IFNG) and the signal transducer and activator of transcription 1 (STAT1) contribute to the resistant phenotype. In addition, upregulation of hypoxia inducible factor 1A (HIF1A), possibly as part of a larger inflammatory response mediated by tumor necrosis factor alpha (TNFA), may also contribute to resistance. Microarray gene expression was confirmed by real-time quantitative PCR for a subset of12 genes, which revealed that IFNG HIF1A and TNFA, among others, were significantly differentially expressed between the two strains at day 14 post-infection.

Conclusion

These results confirm the finding that DBA/2 mice express more Type II interferon and interferon stimulated genes than genetically susceptible strains and suggest that differential expression of HIF1A may also play a role in protection.

【 授权许可】

   
2012 Woelk et al.; licensee BioMed Central Ltd.

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【 参考文献 】
  • [1]Fisher MC, Koenig GL, White TJ, Taylor JW: Molecular and phenotypic description of Coccidioides posadasii sp. nov., previously recognized as the non-California population of Coccidioides immitis. Mycologia 2002, 94:73-84.
  • [2]Laniado-Laborin R: Expanding understanding of epidemiology of coccidioidomycosis in the Western hemisphere. Ann N Y Acad Sci 2007, 1111:19-34.
  • [3]Kirkland TN, Fierer J: Coccidioidomycosis: a reemerging infectious disease. Emerg Infect Dis 1996, 2:192-199.
  • [4]Valdivia L, Nix D, Wright M, Lindberg E, Fagan T, Lieberman D, Stoffer T, Ampel NM, Galgiani JN: Coccidioidomycosis as a common cause of community-acquired pneumonia. Emerg Infect Dis 2006, 12:958-962.
  • [5]Ampel NM, Dols CL, Galgiani JN: Coccidioidomycosis during human immunodeficiency virus infection: results of a prospective study in a coccidioidal endemic area. Am J Med 1993, 94:235-240.
  • [6]Bergstrom L, Yocum DE, Ampel NM, Villanueva I, Lisse J, Gluck O, Tesser J, Posever J, Miller M, Araujo J, et al.: Increased risk of coccidioidomycosis in patients treated with tumor necrosis factor alpha antagonists. Arthritis Rheum 2004, 50:1959-1966.
  • [7]Pappagianis D: Epidemiology of coccidioidomycosis. Curr Top Med Mycol 1988, 2:199-238.
  • [8]Gray GC, Fogle EF, Albright KL: Risk factors for primary pulmonary coccidioidomycosis hospitalizations among United States Navy and Marine Corps personnel, 1981–1994. Am J Trop Med Hyg 1998, 58:309-312.
  • [9]Smith CE, Saito MT, Simons SA: Pattern of 39,500 serologic tests in coccidioidomycosis. J Am Med Assoc 1956, 160:546-552.
  • [10]Kirkland TN, Fierer J: Inbred mouse strains differ in resistance to lethal Coccidioides immitis infection. Infect Immun 1983, 40:912-916.
  • [11]Fierer J, Walls L, Wright F, Kirkland TN: Genes influencing resistance to Coccidioides immitis and the interleukin-10 response map to chromosomes 4 and 6 in mice. Infect Immun 1999, 67:2916-2919.
  • [12]Fierer J, Walls L, Eckmann L, Yamamoto T, Kirkland TN: Importance of interleukin-10 in genetic susceptibility of mice to Coccidioides immitis. Infect Immun 1998, 66:4397-4402.
  • [13]Moore KW, de Waal Malefyt R, Coffman RL, O'Garra A: Interleukin-10 and the interleukin-10 receptor. Annu Rev Immunol 2001, 19:683-765.
  • [14]Waddell SJ, Popper SJ, Rubins KH, Griffiths MJ, Brown PO, Levin M, Relman DA: Dissecting interferon-induced transcriptional programs in human peripheral blood cells. PLoS One 2010, 5:e9753.
  • [15]Dennis G Jr, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA: DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol 2003, 4:P3. BioMed Central Full Text
  • [16]Maere S, Heymans K, Kuiper M: BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics 2005, 21:3448-3449.
  • [17]Thomas MJ, Seto E: Unlocking the mechanisms of transcription factor YY1: are chromatin modifying enzymes the key? Gene 1999, 236:197-208.
  • [18]Ratcliffe PJ: From erythropoietin to oxygen: hypoxia-inducible factor hydroxylases and the hypoxia signal pathway. Blood Purification 2002, 20:445-450.
  • [19]Semenza GL: Hypoxia-inducible factor 1: master regulator of O2 homeostasis. Curr Opin Genet Dev 1998, 8:588-594.
  • [20]Viemann D, Schmidt M, Tenbrock K, Schmid S, Müller V, Klimmek K, Ludwig S, Roth J, Goebeler M: The contact allergen nickel triggers a unique inflammatory and proangiogenic gene expression pattern via activation of NF-kappaB and hypoxia-inducible factor-1alpha. Journal of Immunology (Baltimore, Md.: 1950) 2007, 178:3198-3207.
  • [21]Costa-Pereira AP, Tininini S, Strobl B, Alonzi T, Schlaak JF, Is'harc H, Gesualdo I, Newman SJ, Kerr IM, Poli V: Mutational switch of an IL-6 response to an interferon-gamma-like response. Proceedings of the National Academy of Sciences of the United States of America 2002, 99:8043-8047.
  • [22]Lieberman LA, Banica M, Reiner SL, Hunter CA: STAT1 plays a critical role in the regulation of antimicrobial effector mechanisms, but not in the development of Th1-type responses during toxoplasmosis. Journal of Immunology (Baltimore, Md.: 1950) 2004, 172:457-463.
  • [23]Robertson G, Hirst M, Bainbridge M, Bilenky M, Zhao Y, Zeng T, Euskirchen G, Bernier B, Varhol R, Delaney A, et al.: Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Nature Methods 2007, 4:651-657.
  • [24]Oliva J, Bardag-Gorce F, Lin A, French BA, French SW: The role of cytokines in UbD promoter regulation and Mallory-Denk body-like aggresomes. Experimental and Molecular Pathology 2010, 89:1-8.
  • [25]Lukasiak S, Schiller C, Oehlschlaeger P, Schmidtke G, Krause P, Legler DF, Autschbach F, Schirmacher P, Breuhahn K, Groettrup M: Proinflammatory cytokines cause FAT10 upregulation in cancers of liver and colon. Oncogene 2008, 27:6068-6074.
  • [26]Farber JM: HuMig: a new human member of the chemokine family of cytokines. Biochem Biophys Res Commun 1993, 192:223-230.
  • [27]Padovan E, Spagnoli GC, Ferrantini M, Heberer M: IFN-alpha2a induces IP-10/CXCL10 and MIG/CXCL9 production in monocyte-derived dendritic cells and enhances their capacity to attract and stimulate CD8+ effector T cells. J Leukoc Biol 2002, 71:669-676.
  • [28]Nickoloff BJ, Riser BL, Mitra RS, Dixit VM, Varani J: Inhibitory effect of gamma interferon on cultured human keratinocyte thrombospondin production, distribution, and biologic activities. J Invest Dermatol 1988, 91:213-218.
  • [29]Magee DM, Cox RA: Roles of gamma interferon and interleukin-4 in genetically determined resistance to Coccidioides immitis. Infect Immun 1995, 63:3514-3519.
  • [30]Vinh DC, Masannat F, Dzioba RB, Galgiani JN, Holland SM: Refractory disseminated coccidioidomycosis and mycobacteriosis in interferon-gamma receptor 1 deficiency. Clin Infect Dis 2009, 49:e62-e65.
  • [31]Vinh DC, Schwartz B, Hsu AP, Miranda DJ, Valdez PA, Fink D, Lau KP, Long-Priel D, Kuhns DB, Uzel G, et al.: Interleukin-12 receptor beta1 deficiency predisposing to disseminated Coccidioidomycosis. Clin Infect Dis 2011, 52:e99-e102.
  • [32]Stark GR, Kerr IM, Williams BR, Silverman RH, Schreiber RD: How cells respond to interferons. Annu Rev Biochem 1998, 67:227-264.
  • [33]Kalveram B, Schmidtke G, Groettrup M: The ubiquitin-like modifier FAT10 interacts with HDAC6 and localizes to aggresomes under proteasome inhibition. J Cell Sci 2008, 121:4079-4088.
  • [34]Gong P, Canaan A, Wang B, Leventhal J, Snyder A, Nair V, Cohen CD, Kretzler M, D'Agati V, Weissman S, et al.: The ubiquitin-like protein FAT10 mediates NF-kappaB activation. J Am Soc Nephrol 2010, 21:316-326.
  • [35]Raasi S, Schmidtke G, Groettrup M: The ubiquitin-like protein FAT10 forms covalent conjugates and induces apoptosis. J Biol Chem 2001, 276:35334-35343.
  • [36]Xanthou G, Duchesnes CE, Williams TJ, Pease JE: CCR3 functional responses are regulated by both CXCR3 and its ligands CXCL9, CXCL10 and CXCL11. Eur J Immunol 2003, 33:2241-2250.
  • [37]Singal DP, Ye M, Quadr SA: Major histocompatibility-encoded human proteasome LMP2. Genomic organization and a new form of mRNA. J Biol Chem 1995, 270:1966-1970.
  • [38]Mishto M, Bonafe M, Salvioli S, Olivieri F, Franceschi C: Age dependent impact of LMP polymorphisms on TNFalpha-induced apoptosis in human peripheral blood mononuclear cells. Exp Gerontol 2002, 37:301-308.
  • [39]Zimmerer JM, Lesinski GB, Radmacher MD, Ruppert A, Carson WE 3rd: STAT1-dependent and STAT1-independent gene expression in murine immune cells following stimulation with interferon-alpha. Cancer Immunol Immunother 2007, 56:1845-1852.
  • [40]Schmidtke G, Eggers M, Ruppert T, Groettrup M, Koszinowski UH, Kloetzel PM: Inactivation of a defined active site in the mouse 20S proteasome complex enhances major histocompatibility complex class I antigen presentation of a murine cytomegalovirus protein. J Exp Med 1998, 187:1641-1646.
  • [41]Taylor GA: IRG proteins: key mediators of interferon-regulated host resistance to intracellular pathogens. Cell Microbiol 2007, 9:1099-1107.
  • [42]MacMicking JD, Taylor GA, McKinney JD: Immune control of tuberculosis by IFN-gamma-inducible LRG-47. Science 2003, 302:654-659.
  • [43]Butcher BA, Greene RI, Henry SC, Annecharico KL, Weinberg JB, Denkers EY, Sher A, Taylor GA: p47 GTPases regulate Toxoplasma gondii survival in activated macrophages. Infect Immun 2005, 73:3278-3286.
  • [44]Henry SC, Traver M, Daniell X, Indaram M, Oliver T, Taylor GA: Regulation of macrophage motility by Irgm1. Journal of Leukocyte Biology 2010, 87:333-343.
  • [45]Singh SB, Davis AS, Taylor GA, Deretic V: Human IRGM induces autophagy to eliminate intracellular mycobacteria. Science 2006, 313:1438-1441.
  • [46]Okamoto T, Gohil K, Finkelstein EI, Bove P, Akaike T, van der Vliet A: Multiple contributing roles for NOS2 in LPS-induced acute airway inflammation in mice. Am J Physiol Lung Cell Mol Physiol 2004, 286:L198-L209.
  • [47]Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR: Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays. BMC Genomics 2006, 7:59. BioMed Central Full Text
  • [48]Lawler J, Sunday M, Thibert V, Duquette M, George EL, Rayburn H, Hynes RO: Thrombospondin-1 is required for normal murine pulmonary homeostasis and its absence causes pneumonia. J Clin Invest 1998, 101:982-992.
  • [49]Shubitz LF, Dial SM, Perrill R, Casement R, Galgiani JN: Vaccine-induced cellular immune responses differ from innate responses in susceptible and resistant strains of mice infected with Coccidioides posadasii. Infect Immun 2008, 76:5553-5564.
  • [50]Johnson LA, Prevo R, Clasper S, Jackson DG: Inflammation-induced uptake and degradation of the lymphatic endothelial hyaluronan receptor LYVE-1. J Biol Chem 2007, 282:33671-33680.
  • [51]Gale NW, Prevo R, Espinosa J, Ferguson DJ, Dominguez MG, Yancopoulos GD, Thurston G, Jackson DG: Normal lymphatic development and function in mice deficient for the lymphatic hyaluronan receptor LYVE-1. Mol Cell Biol 2007, 27:595-604.
  • [52]Fandrey J, Gorr TA, Gassmann M: Regulating cellular oxygen sensing by hydroxylation. Cardiovasc Res 2006, 71:642-651.
  • [53]van Uden P, Kenneth NS, Rocha S: Regulation of hypoxia-inducible factor-1alpha by NF-kappaB. Biochem J 2008, 412:477-484.
  • [54]Lowenthal JW, Ballard DW, Bogerd H, Bohnlein E, Greene WC: Tumor necrosis factor-alpha activation of the IL-2 receptor-alpha gene involves the induction of kappa B-specific DNA binding proteins. J Immunol 1989, 142:3121-3128.
  • [55]Galgiani JN, Ampel NM, Blair JE, Catanzaro A, Johnson RH, Stevens DA, Williams PL: Coccidioidomycosis. Clin Infect Dis 2005, 41:1217-1223.
  • [56]Miller MB, Hendren R, Gilligan PH: Posttransplantation disseminated coccidioidomycosis acquired from donor lungs. J Clin Microbiol 2004, 42:2347-2349.
  • [57]Nizet V, Johnson RS: Interdependence of hypoxic and innate immune responses. Nat Rev Immunol 2009, 9:609-617.
  • [58]Cox RA, Magee DM: Production of tumor necrosis factor alpha, interleukin-1 alpha, and interleukin-6 during murine coccidioidomycosis. Infect Immun 1995, 63:4178-4180.
  • [59]Fierer J, Waters C, Walls L: Both CD4+ and CD8+ T cells can mediate vaccine-induced protection against Coccidioides immitis infection in mice. J Infect Dis 2006, 193:1323-1331.
  • [60]Jacobs MD, Harrison SC: Structure of an IkappaBalpha/NF-kappaB complex. Cell 1998, 95:749-758.
  • [61]Ji Y, Zhang W: Th17 cells: positive or negative role in tumor? Cancer Immunol Immunother 2010, 59:979-987.
  • [62]Hung CY, Gonzalez A, Wuthrich M, Klein BS, Cole GT: Vaccine immunity to coccidioidomycosis occurs by early activation of three signal pathways of T helper cell response (Th1, Th2, and Th17). Infect Immun 2011, 79:4511-4522.
  • [63]Kuberski TT, Servi RJ, Rubin PJ: Successful treatment of a critically ill patient with disseminated coccidioidomycosis, using adjunctive interferon-gamma. Clin Infect Dis 2004, 38:910-912.
  • [64]Oshlack A, Robinson MD, Young MD: From RNA-seq reads to differential expression results. Genome Biol 2010, 11:220. BioMed Central Full Text
  • [65]Jimenez Mdel P, Walls L, Fierer J: High levels of interleukin-10 impair resistance to pulmonary coccidioidomycosis in mice in part through control of nitric oxide synthase 2 expression. Infect Immun 2006, 74:3387-3395.
  • [66]Bolstad BM, Collin F, Brettschneider J, Simpson K, Cope L, Irizarry R, Speed TP: Quality Assessment of Affymetrix GeneChip Data. In Bioinformatics and Computational Biology Solutions Using R and Bioconductor. Edited by Gentleman R, Carey V, Huber W, Irizarry R, Dutoit S. Heidelberg: Springer; 2005:33-47.
  • [67]Wu Z, Irizarry RA, Gentleman R, Martinez-Murillo F, Spencer F: A Model-Based Background Adjustment for Oligonucleotide Expression Arrays. Journal of the American Statistical Association 2004, 99:909-917.
  • [68]Hubbell E, Liu W-M, Mei R: Robust estimators for expression analysis. Bioinformatics (Oxford, England) 2002, 18:1585-1592.
  • [69]Hastings JM, Jackson KS, Mavrogianis PA, Fazleabas AT: The Estrogen Early Response Gene FOS Is Altered in a Baboon Model of Endometriosis. Biology of Reproduction 2006, 75:176-182.
  • [70]Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M: KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Research 2010, 38:D355-D360.
  • [71]Benjamini Y, Hochberg Y: Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. Journal of the Royal Statistical Society. Series B (Methodological) 1995, 57:289-300.
  • [72]Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T: Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 2003, 13:2498-2504.
  • [73]Yin R, Tian F, Frankenberger B, de Angelis MH, Stoeger T: Selection and evaluation of stable housekeeping genes for gene expression normalization in carbon nanoparticle-induced acute pulmonary inflammation in mice. Biochemical and Biophysical Research Communications 2010, 399:531-536.
  • [74]Konstantinidou V, Covas MI, Munoz-Aguayo D, Khymenets O, de la Torre R, Saez G, Tormos Mdel C, Toledo E, Marti A, Ruiz-Gutierrez V, et al.: In vivo nutrigenomic effects of virgin olive oil polyphenols within the frame of the Mediterranean diet: a randomized controlled trial. FASEB J 2010, 24:2546-2557.
  • [75]Rieu I, Powers SJ: Real-time quantitative RT-PCR: design, calculations, and statistics. Plant Cell 2009, 21:1031-1033.
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