期刊论文详细信息
BMC Microbiology
A novel Bacillus pumilus-related strain from tropical landfarm soil is capable of rapid dibenzothiophene degradation and biodesulfurization
Leandro Lopes Loguercio2  Eric de Lima Silva Marques2  Fernanda Maria Oliveira Sousa2  Rachel Passos Rezende2  Elizandra Bruschi Buzanello1 
[1] Faculty São Miguel do Iguaçu – UNIGUAÇU/FAESI, Rua Valentin Celeste Palavro, 1501, Jardim Panorama, São Miguel do Iguaçu, 85877-000, PR, Brazil;Department of Biological Sciences, State University of Santa Cruz – UESC, Rod. BR 415, Km 16, Ilhéus, 45662-900, BA, Brazil
关键词: Bioremediation;    4S pathway;    2-hydroxybiphenyl-2-sulfinate;    Dibenzothiophene sulfoxide;    B. pumilus;   
Others  :  1137751
DOI  :  10.1186/s12866-014-0257-8
 received in 2013-12-13, accepted in 2014-09-26,  发布年份 2014
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【 摘 要 】

Background

The presence of organic sulfur-containing compounds in the environment is harmful to animals and human health. The combustion of these compounds in fossil fuels tends to release sulfur dioxide in the atmosphere, which leads to acid rain, corrosion, damage to crops, and an array of other problems. The process of biodesulfurization rationally exploits the ability of certain microorganisms in the removal of sulfur prior to fuel burning, without loss of calorific value. In this sense, we hypothesized that bacterial isolates from tropical landfarm soils can demonstrate the ability to degrade dibenzothiophene (DBT), the major sulfur-containing compound present in fuels.

Results

Nine bacterial isolates previously obtained from a tropical landfarm soil were tested for their ability to degrade dibenzothiophene (DBT). An isolate labeled as RR-3 has shown the best performance and was further characterized in the present study. Based on physiological aspects and 16 s rDNA sequencing, this isolate was found to be very closely related to the Bacillus pumillus species. During its growth, high levels of DBT were removed in the first 24 hours, and a rapid DBT degradation within the first hour of incubation was observed when resting cells were used. Detection of 2-hydroxybiphenyl (HBP), a marker for the 4S pathway, suggests this strain has metabolical capability for DBT desulfurization. The presence of MgSO4 in growth medium as an additional sulfur source has interfered with DBT degradation.

Conclusions

To our knowledge, this is the first study showing that a Bacillus strain can metabolize DBT via the 4S pathway. However, further evidences suggest RR-3 can also use DBT (and/or its derivative metabolites) as carbon/sulfur source through another type of metabolism. Compared to other reported DBT-degrading strains, the RR-3 isolate showed the highest capacity for DBT degradation ever described in quantitative terms.

The potential application of this isolate for the biodesulfurization of this sulfur-containing compound in fuels prior to combustion was discussed.

【 授权许可】

   
2014 Buzanello et al.; licensee BioMed Central Ltd.

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【 参考文献 】
  • [1]Bugg TDH, Winfield CJ: Enzymatic cleavage of aromatic rings: mechanistic aspects of the catechol dioxygenases and later enzymes of bacterial oxidative cleavage pathways. Nat Prod Rep 1998, 15:513-530.
  • [2]Kilbane JJ: Microbial biocatalyst developments to upgrade fossil fuels. Cur Opin Microbiol 2006, 17:305-314.
  • [3]Denome SA, Olson ES, Young KD: Identification and cloning of genes involved in specific desulfurization of dibenzothiophene by Rhodococcus sp. Strain IGTS8. Appl Environ Microbiol 1993, 59:837-2843.
  • [4]Kobayashi M, Horiuchi K, Yoshikawa O, Hirasawa K, Ishii Y, Fujino K, Sugiyama H, Maruhashi K: Kinetic analysis of microbial desulfurization of model and light gas oil: containing multiple alkyl dibenzothiophenes. Rev Biosc Biotechnol Biochem 2001, 65(2):298-304.
  • [5]Mohebali G, Ballb AS, Rasekha B, Kaytasha A: Biodesulfurization potential of a newly isolated bacterium Gordonia alkanivorans RIPI90A. Enz Microbiol Tech 2008, 40:578-584.
  • [6]Papizadeh M, Ardakani MR, Motamedi H, Rasouli I, Zarei M: C-S targeted biodegradation of dibenzothiophene by Stenotrophomonas sp. NISOC-04. Appl Biochem Biotechnol 2011, 165:938-948.
  • [7]Abbad-Andaloussi S, Warzywoda M, Monot F: Microbial desulfurization of diesel oils by selected bacterial strains. Rev IFP 2003, 58(4):505-513.
  • [8]Chen H, Zhang WJ, Cai YB, Zhang Y, Li W: Elucidation of 2-hydroxybiphenyl effect on dibenzothiophene desulfurization by Microbacterium sp. strain ZD-M2. Rev Bior Technol 2008, 99:6928-6933.
  • [9]Ardakani MR, Aminsefat A, Rasekh B, Yazdiyan F, Zargar B, Zarei M, Najafzadeh H: Biodesulfurization of Dibenzotiophene by a newly isolated Stenotrophomonas maltophilia strain Kho1. J W Appl Scienc 2010, 10(3):272-278.
  • [10]Xu W, Zhou W, Huang W, Pan J, Li H, Wu X, Yan Y: Preparation and evaluation of a novel surface-imprinted polymer for selective adsorption of dibenzothiophene. Microchim Acta 2011, 175:167-175.
  • [11]GILBERT SC, Morton J, Buchanan S, Oldfield C, McRoberts A: Isolation of a unique benzothiophene-desulphurizing bacterium, Gordonia sp. Strain 213E (NCIMB 40816), and characterization of the desulphurization pathway. Microbiology 1998, 144:2545-2553.
  • [12]Konishi J, Onaka T, Ishii Y, Suzuki M: Demonstration of the carbon-sulfur bond targeted desulfurization of benzothiophene by thermophilic Paenibacillus sp. strain A11-2 capable of desulfurization of dibenzothiophene. FEMS Microbiol Lett 2000, 187:151-215.
  • [13]Matsui T: Alkylated benzothiophene desulfurization by Rhodococcus sp. strain T09. Biosc Biotechnol Biochem 2000, 64:596-599.
  • [14]Kayzer KJ, Bielaga-Jones BA, Jackowski K, Odusan O, Kilbane JJ II: Utilization of organosulphur compounds by axenic and mixed cultures of Rhodococcus IGTS8. J Gen Microbiol 1993, 139:3123-3129.
  • [15]Ma T: The desulfurization pathway in Rhodococcus. In Biology of Rhodococcus. Edited by Alvarez HM. Springer, Berlin Heidelberg; 2010:207-230. (Chp 8). doi:10.1007/978-3-642-12937-7_8
  • [16]Van Afferden M, Tappea D, Beyera M, Trüper HG, Kleina J: Biochemical mechanisms for the desulfurization of coal-relevant organic sulfur compounds. Fuel 1993, 72:1635-1643.
  • [17]Duarte GF, Rosado AS, Seldin L, De Araujo W, Van Elsas JD: Analysis of bacterial community structure in sulfurous-oil-containing soils and detection of species carrying dibenzothiophene desulfurization (Dsz) genes. Appl Environ Microbiol 2001, 67(3):1052-1062.
  • [18]Hamme JDV, Singh A, Ward OP: Recent advances in petroleum microbiology. Rev Microbiol Molec Biol 2003, 67(4):503-549.
  • [19]Maciel BM, Dias JC, Dos Santos AC, Filho RC, Fontana R, Loguercio LL, Rezende RP: Microbial surfactant activities from a petrochemical landfarm in a humid tropical region of Brazil. J Can Microbiol 2007, 53:937-943.
  • [20]Satomi M, La Duc MT, Venkateswaran K: Bacillus safensis sp. nov., isolated from spacecraft and assembly-facility surfaces. J Syst Ev Microbiol 2006, 56:1735-1740.
  • [21]Duarte EAA, Lacerda GV Jr, De Oliveira TA, Brendel M, Loguercio LL, Cascardo JC: Bioprospection of bacteria and yeasts from Atlantic Rainforest soil capable of growing in crude-glycerol residues. Gen Mol Res 2013, 67(3):1052-1062.
  • [22]Su F, Hua D, Zhang Z, Wang X, Tang H, Tao F, Tai C, Wu Q, Wu G, Xu P: Genome sequence of Bacillus pumilus S-1, an efficient isoeugenol-utilizing producer for natural vanillin. J Bacteriol 2011, 193:6400-6401.
  • [23]Gai Z, Yu B, Li L, Wang Y, Ma C, Feng J, Deng Z, Xu P: Cometabolic degradation of dibenzofuran and dibenzothiophene by a newly isolated carbazole-degrading Sphingomonas sp. Strain Appl Environ Microbiol 2007, 73(9):2832-2838.
  • [24]Li W, Zhang Y, Wang MD, Shi Y: Biodesulfurization of dibenzothiophene and other organic sulfur compounds by a newly isolated Microbacterium strain ZD-M2. FEMS Microbiol Lett 2005, 247(1):45-50.
  • [25]Davoodi-Dehaghani F, Vosoughi M, Ziaee AA: Biodesulfurization of dibenzothiophene by a newly isolated Rhodococcus erythropolis strain. Rev Bior Technol 2010, 101:1102-1105.
  • [26]Ansari F, Prayuenyong P, Tothill IE: Biodesulfurization of dibenzothiophene by Shewanella putrefaciens NCIMB 8768. J Biol Phys Chem 2007, 7:75-77.
  • [27]Baldi F, Pepi M, Fava F: Growth of Rhodosporidium toruloides strain DBVPG6662 on dibenzothiophene crystals and orimulsion. Appl Environ Microbiol 2003, 69:4689-4696.
  • [28]Seo J-S, Keum YS, Cho LLK, Li QX: Degradation of dibenzothiophene and carbazole by Arthrobacter sp. p 1–1. Int Biodeter Biodegr 2006, 58:36-43.
  • [29]Li Y, Li J, Wang C, Wang P: Growth kinetics and phenol biodegradation of psychrotrophic Pseudomonas putida LY1. Bioresour Technol 2010, 17:6740-6744.
  • [30]Carnes EC, Lopez DM, Donegan NP, Cheung A, Gresham H, Timmins GS, Brinker CJ: Confinement-induced quorum sensing of individual Staphylococcus aureus bacteria. Nat Chem Biol 2010, 6:41-45.
  • [31]Siehnel R, Traxler B, An DD, Parsek MR, Schaefer AL, Singh PK: A unique regulator controls the activation threshold of quorum-regulated genes in Pseudomonas aeruginosa. Proc Natl Acad Sci U S A 2010, 107:7916-7921.
  • [32]Crawford DL, GUPTA RK: Oxidation of dibenzothiophene by Cunninghamella elegans. Cur Microbiol 1990, 21:229-231.
  • [33]Bahuguna A, Lily MK, Munjal A, Singh RN, Dangwal K: Desulfurization of dibenzothiophene (DBT) by a novel strain Lysinibacillus sphaericus DMT-7 isolated from diesel contaminated soil. J Environ Scienc 2011, 23(6):975-982.
  • [34]Caro A, Boltes K, Letón P, García-Calvo E: Dibenzothiophene biodesulfurization in resting cell conditions by aerobic bacteria. J Biochem Eng 2007, 35:191-197.
  • [35]Doyle JJ, Doyle JL: Isolation of plant DNA from fresh tissue. Focus 1991, 12:13-15.
  • [36]Weisburg WG, Barns SM, Pelletier DA, Lane DJ: 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 1991, 173(2):697-703.
  • [37]Erwing B, Green P: Base-calling of automated sequencer traces using phred. II, Error probabilities. Genome Res 1998, 8:186-194.
  • [38]Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol 1990, 215(3):403-410.
  • [39]Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S: MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Ev 2011, 28(10):2731-2739.
  • [40]Shavandi M, Sadeghizadeh M, Khajeh K, Mohebali G, Zomorodipour A: Genomic structure and promoter analysis of the Dsz operon for dibenzothiophene biodesulfurization from Gordonia alkanivorans RIPI90A. Appl Gen Mol Biotechnol 2010, 87:1455-1461.
  • [41]Loguercio LL, Barreto ML, Rocha TL, Santos CG, Teixeira FF, Paiva E: Combined analysis of supernatant-based feeding bioassays and PCR as a first-tier screening strategy for Vip-derived activities in Bacillus thuringiensis strains effective against tropical fall armyworm. J Appl Microbiol 2002, 93:269-277.
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