期刊论文详细信息
Antimicrobial Resistance and Infection Control
The gut is the epicentre of antibiotic resistance
Jean Carlet1 
[1]Réanimation Polyvalente, Fondation Hopital St Joseph, 185 Rue Raymond Losserand, Paris, 75014, France
关键词: Destroy and restore;    Search;    Clostridium difficile;    Probiotics;    SDD;    Resistance to antibiotics;    Gut;   
Others  :  791040
DOI  :  10.1186/2047-2994-1-39
 received in 2012-07-15, accepted in 2012-11-19,  发布年份 2012
PDF
【 摘 要 】

The gut contains very large numbers of bacteria. Changes in the composition of the gut flora, due in particular to antibiotics, can happen silently, leading to the selection of highly resistant bacteria and Candida species. These resistant organisms may remain for months in the gut of the carrier without causing any symptoms or translocate through the gut epithelium, induce healthcare-associated infections, undergo cross-transmission to other individuals, and cause limited outbreaks. Techniques are available to prevent, detect, and treat the carriage of resistant organisms in the gut. However, evidence on these techniques is scant, the only exception being selective digestive decontamination (SDD), which has been extensively studied in neutropenic and ICU patients. After the destruction of resistant colonizing bacteria, which has been successfully obtained in several studies, the gut could be re-colonized with normal faecal flora or probiotics. Studies are warranted to evaluate this concept.

【 授权许可】

   
2012 Carlet; licensee BioMed Central Ltd.

【 预 览 】
附件列表
Files Size Format View
20140705010009843.pdf 213KB PDF download
【 参考文献 】
  • [1]Carlet J, Collignon P, Goldmann P, et al.: Society’s failure to protect a precious resource: antibiotics. Lancet 2011, 378:369-371.
  • [2]Hughes JM: Preserving the lifesaving power of antimicrobial agents. Jama 2011, 305:1027-1028.
  • [3]Piddock LJ: The crisis of no new antibiotics-what is the way forward. Lancet Infect Dis 2012, 12:24953.
  • [4]Bush K, Courvalin P, Gautam D, et al.: Tackling antibiotic resistance. Nature reviews/microbiology 2011, 9:894-895.
  • [5]Lowe CF, McGeer A, Muller MP, Katz K, for the Toronto ESBL working group: Decreased susceptibility to non-carbapenem antimicrobials in extended-spectrum-B-lactamase-producing Escherichia coli and Klebsiella pneumoniae isolates in Toronto, Canada. Antimicrob Agents Chemother 2012, 56:3977-3980.
  • [6]Baquero F, Alvarez-Ortega C, Martinez JL: Ecology and evolution of antibiotic resistance. Envoron Microbial Reports 2009, 1:469-476.
  • [7]Canton R, Akova M, Carmeli Y, et al.: Rapid evolution and spread of carbapenemases among enterobacteriaceae in Europe. Cli Microbiol Infect 2012, 18:413-431.
  • [8]Gupta N, Limbago BM, Patel JB, Kallen AJ: Carbapenem-resistant Enterobacteriaceae: epidemiology and prevention. Clin Infect Dis 2011, 53:60-67.
  • [9]Bochholz U, Werber D, Bohmer MM, et al.: German outbreak of Escherichia coli O104:H4 associated with sprouts. N Engl J Med 2011, 365:1763-1770.
  • [10]European Centre for Disease Prevention and Control: EARSS net database. http://ecdc.europa.eu webcite
  • [11]Calbo E, Freixas N, Xercavins M, et al.: Foodborne nosocomial outbreak of SHV1 and CTX-M-15-producing Klebsiella pneumoniae: epidemiology and control. Clin Infect Dis 2011, 52:743-749.
  • [12]D’Costa VM, King CE, Kalan L, et al.: Antibiotic resistance is ancient. Nature 2011, 477:457-461.
  • [13]Levy SB: Microbial resistance to antibiotics. An evolving and persistent problem. Lancet 1982, 2:83-88.
  • [14]Hecker MT, Aron DC, Patel NP, Leymann MK, Donskey CJ: Unnecessary use of antimicrobials in hospitalized patients: current patterns of misuse with an emphasis on the antianaerobic spectrum of activity. Arch Intern Med 2003, 163:972-978.
  • [15]Overdevest I, Willemsen I, Rijnsburger M, et al.: Extended-spectrum β-lactamase genes of Escherichia coli in chicken meat and humans, the Netherlands. Emerg Infect Dis 2011, 17:1216-1222.
  • [16]Leverstein-van Hall MA, Dierihx CM, Cohen Stuart J, et al.: Dutch patients, retail chicken meat and poultry share the same ESBL genes, plasmids and strains. Clin Microbial Infect 2011, 17:873-880.
  • [17]Vieira AR, Collignon P, Aarestrup FM, et al.: Association between antimicrobial resistance in Escherichia coli isolates from food animals and bloodstream isolates from humans in Europe: an ecological study. Foodborne Pathog Dis 2011, 8:1295-1301.
  • [18]Jarlier V, Trystram D, Brun-Buisson C, et al.: Curbing methicillin resistant Staphylococcus aureus in 38 French hospitals through a 15-year institutional program. Arch Intern Med 2010, 170:552-559.
  • [19]Cipolla D, Giuffrè M, Mammina C, Corsello L: Prevention of nosocomial infections and surveillance of emerging resistances in NICU. J Matern Fetal Neonatal Med 2011, 24(1):23-26.
  • [20]Allegranzi B, Storr J, Dziekan G, et al.: The first global patient challenge “Clean care is safer care”: from the lunch to current progress and achievements. J Hosp Infect 2007, 65(suppl 2):115-123.
  • [21]Forstberg KJ, Reyes A, Wang B, et al.: The shared antibiotic resistome of soil bacteria and human pathogens. Science 2012, 337:1107-1111.
  • [22]Allen HK, Donato J, Wang HU, et al.: Call of the wild: antibiotic resistance genes in natural environments. Nature Reviews/Microbiology 2010, 8:251-259.
  • [23]Tello A, Austin B, Telfer TC: Selective pressure of antibiotic pollution on bacteria of importance to public health. Environ Health Perspect 2012, 120:1100-1106.
  • [24]Peterson J, Garges S, Giovanni M, et al.: The NIH human microbiome project. Genome Res 2009, 19:2317-2323.
  • [25]Cremet L, Bourigault C, Lepelletier D, et al.: Nosocomial outbreak of carbapenem-resistant Enterobacter cloacae highlighting the interspecies transferability of the blaOXA-48 gene in the gut flora. J Antimicrob Chemother 2012, 67:1041-1043.
  • [26]Schjorring S, Krogfelt KA: Assessment of bacterial antibiotic resistance transfer in the gut. Int J Microbiol 2011, 2011:312956.
  • [27]Stecher B, Denzler R, Maier L, et al.: Gut inflammation can boost horizontal gene transfer between pathogenic and commensal Enterobacteriaceae. Proc Natl Acad Sci USA 2012, 109:1269-1274.
  • [28]Guarino A, Wudy A, Basile F, Ruberto E, Buccigrossi V: Composition and roles of intestinal microbiota in children. J Matern Fetal Neonatal Med 2012, 25(Suppl 1):63-66.
  • [29]Das P, Singh AK, Pal T, et al.: Colonization of the gut with Gram-negative bacilli, its association with neonatal sepsis and its clinical relevance in a developing country. J Med Microbiol 2011, 60:1651-1660.
  • [30]Tezuka H, Ohteki T: Regulation of intestinal homeostasis by dendritic cells. Immunol Rev 2010, 234:247-258.
  • [31]Cremieux AC, Muller-Serieys C, Panhard X, et al.: Emergence of resistance in normal human aerobic commensal flora during telithromycin and amoxicillin-clavulanic acid treatments. Antimicrobiol Agents Chemother 2003, 47:2030-2035.
  • [32]Jemberg C, Loffmark S, Edlund C, Jansson J: Long-term impacts of antibiotic exposure on the human intestinal microbiota. Microbiology 2010, 156:3216-3223.
  • [33]Jeong SH, Song YK, Cho JH: Risk assessment of ciprofloxacin, flavomycin, olaquindox and colistin sulfate based on microbiological impact on human biota. Regul Toxicol Pharmacol 2009, 53:209-216.
  • [34]Jakobsson HE, Jemberg C, Andersson AF, et al.: Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome. PLos One 2010, 5:e 9836.
  • [35]Donskey CJ, Chowdhry TK, Hecker MT, et al.: Effect of antibiotic therapy on the density of vancomycin-resistant enterococci in the stool of colonized patients. N Engl J Med 2000, 343:1925-1932.
  • [36]Nicolas-Chanoine MH, Gruson C, Bialek-Davenet S, et al.: 10-fold increase (2006–11) in the rate of healthy subjects with extended-spectrum B-lactamase-producing Escherichia coli faecal carriage in a Parisian check-up centre. J Antimicrob Chemother 2012. November 9 Epub ahead of print
  • [37]Timsit JF, Garrait V, Misset B, et al.: The digestive tract as a major site for Acinetobacter baumannii colonization in intensive care unit patients. J Infect Dis 1993, 168:1336-1337.
  • [38]Thom KA, Hsiao WW, Harris AD: Patients with Acinetobacter baumannii bloodstream infections are colonized in the gastrointestinal tract with identical strains. Am J Infect Control 2010, 38:751-753.
  • [39]Goldstein EJ: Beyond the target pathogen: ecological effects of the hospital formulary. Curr Opin Infect Dis 2011, 24(Suppl 1):S21-31.
  • [40]Taneja R, Marshall JC: Vasoactive agents and the gut: fueling the motor of multiple organ failure. Crit Care Med 2000, 28:3017-3018.
  • [41]van Uffelen R, van Saene HK, Fidler V, Löwenberg A: Oropharyngeal flora as a source of bacteria colonizing the lower airways in patients on artificial ventilation. Intensive Care Med 1984, 10:233-237.
  • [42]Stoutenbeek CP, van Saene HK, Miranda DR, Zandstra DF: A new technique of infection prevention in the intensive care unit by selective digestive decontamination of the digestive tract. Acta Anaesthegiol Belg 1983, 34:209-221.
  • [43]Kesteman AS, Perrin-Guyomard A, Laurenti M, et al.: Emergence of resistant Klebsiella pneumoniae in the intestinal tract during successful treatment of Klebsiella pneumoniae lug infection in rats. Antimicrob Agents Chemother 2010, 54:2960-2964.
  • [44]Lemmens N, van Wamel W, Snijders S, et al.: Genomic comparisons of USA 333 Staphylococcus aureus colonizing the nose and rectum in children with skin abscesses. Microbiol Pathog 2011, 50:192-199.
  • [45]Uramatsu M, Matsumoto T, Shibuya K, et al.: Involvement of endotoxin in the mortality of mice with gut-derived sepsis due to methicillin-resistant Staphylococcus aureus. Microbiol Immunol 2010, 54:330-337.
  • [46]Guet-Revillet H, Le Monnier A, Breton N, et al.: Environmental contamination with extended-spectrum β-lactamases: is there a difference between Escherichia coli and Klebsiella spp? Am J Infect Control 2012, 40:845-848.
  • [47]Stewardson A, Allegranzi B, Sax H, Kilpatrick C, Pittet D: Back to the future: rising to the Semmelweis challenge in hand hygiene. Future Microbiol 2011, 6:855-876.
  • [48]Lecky DM, McNulty CA, Adriaenssens N: Development of an educational resource on microbes, hygiene and prudent antibiotic use for junior and senior school children. J Antimicrobial Chemother 2011, 66(Suppl 5):23-31.
  • [49]Sax H, Allegranzi B, Uckay I, et al.: ‘My five moments for hand hygiene’: a user-centred design approach to understand, train, monitor and report hand hygiene. J Hosp Infect 2007, 67:9-21.
  • [50]Kumarasamy KK, Toleman MA, Walsh TR, et al.: Emergence of a new antibiotic resistance mechanism in India, Pakistan, and the UK. A molecular, biological and epidemiological study. Lancet Infect Dis 2010, 10:597-602.
  • [51]Loofts T, Johnson TA, Allen HK, et al.: In-feed antibiotic effects on the swine intestinal microbiome. Proc Natl Acad Sci USA 2012, 109:1691-1696.
  • [52]De Vries-Hospers HG, Sleifer DT, Mulder NH, et al.: Bacteriological aspects of selective decontamination of the digestive tract as a method in infection prevention in granulocytopenic patients. Antimicrob Agents Chemother 1981, 19:813-820.
  • [53]Stoutenbeek CP, van Saene HK, Miranda DR, Zandstra DF: The effect of selective decontamination of the digestive tract on colonization and infection rate in multiple trauma patients. Intensive Care Med 1984, 10:185-192.
  • [54]Al-Naemi N, Heddema ER, Bart A, et al.: Emergence of multidrug-resistant Gram-negative bacteria during selective decontamination of the digestive tract on an intensive care unit. J Antimicrob Chemother 2006, 58:853-856.
  • [55]De Smet AM, Kluytmans JA, Blok HE, et al.: Selective digestive tract decontamination and selective oropharyngeal decontamination and antibiotic resistance in patients in intensive-care units: an open-label clustered group-randomised, crossover study. Lancet Infect Dis 2011, 11:372-380.
  • [56]Ochoa-Ardila ME, Garcia-canas A, Gomez-Mediavilla K, et al.: Long term use of selective decontamination of the digestive tract does not increase antibiotic resistance: a 5-year prospective cohort study. Intensive Care Med 2011, 37:1458-1465.
  • [57]De Smet AM, Kluytmans JA, Cooper BS, et al.: Decontamination of the digestive tract and oropharynx in ICU patients. N Engl J Med 2009, 360:20-31.
  • [58]De Jonge E, Schultz MJ, Spaniaard L, et al.: Effect of selective decontamination of digestive tract on mortality and acquisition of resistant bacteria in intensive care: a randomized controlled trial. Lancet 2003, 362:1011-1016.
  • [59]Guandalini S: Probiotics for prevention and treatment of diarrhea. J Clin Gastroenterol 2011, 45(Suppl):S149-153.
  • [60]Barth S, Duncker S, Hempe J, et al.: Escherichia coli Nissle 1917 for probiotic use in piglets: evidence for intestinal colonization. J Applied Microbiol 2009, 107:1697-1710.
  • [61]Prilassnig M, Wenisch C, Daxboeck F, Feierl G: Are probiotics detectable in human feces after oral uptake by healthy volonteers? Wien Klin Wochenschr 2007, 119:456-462.
  • [62]Joares-Nguyen-Xuan TH, Boehm SK, Joares L, et al.: Survival of the probiotic Escherichia coli Nissle 1917 (EcN) in the gastrointestinal tract given in combination with oral mesalamine to healthy volunteers. Inflamm Bowel Dis 2010, 16:256-262.
  • [63]Smajs D, Bures J, Chaloupkova E, et al.: Experimental administration of the probiotic Escherichia coli strain Nissle 1917 results in decreased diversity of E. coli strains in pigs. Curr Microbiol 2012, 64:205-210.
  • [64]Tannock GW, Tiong IS, Priest P, et al.: Testing probiotic strain Escherichia coli Nissle 1917 (Mutaflor) for its ability to reduce carriage of multidrug-resistant E. coli by elderly residents in long-term care facilities. J Med Microbiol 2011, 60:366-370.
  • [65]Herbrecht R, Nivoix Y: Saccharomyces cerevisiae fungemia: and adverse effect of Saccharomyces boulardii probiotic administration. Clin Infect Dis 2005, 40:1635-1637.
  • [66]Morrow LE, Goginari V, Malesker MA: Probiotic, Prebiotic, and symbiotic in critically ill patients. Curr Opin Crit Care 2012, 18:91.
  • [67]Na X, Kelly C: Probiotics in Clostridium difficile infection. J Clin Gastroenterol 2011, 45:168-71.
  • [68]Silvestri L, van Saene HK, Gregori D, et al.: Probiotics to prevent ventilator-associated pneumonia: no robust evidence from randomized controlled trial. Crit Care Med 2010, 38:1616-1617.
  • [69]Brun Buisson C, Legrand P, Rauss A, et al.: Intestinal decontamination for control of nosocomial multi-resistant gram-negative bacilli. Study of an outbreak in an intensive care unit. Ann Intern Med 1989, 110:873-881.
  • [70]Buehlmann M, Bruderer T, Frei R, Widemer AF: Effectiveness of a new decolonization regimen for eradication of extended-spectrum B-lactamase-producing Enterobacteriaceae. J Hosp Infect 2011, 77:113-117.
  • [71]Perez F, Pultz M, Endimiani A, Bonomo RA, Donskey CJ: Effect of antibiotic treatment on establishment and elimination of intestinal colonization by KPC-producing Klebsiella pneumoniae in mice. Antimicrob Agents Chemother 2011, 55:2585-2589.
  • [72]Saides-Odes L, Polachek H, Peled N, et al.: A randomized, double-blind, placebo-controlled trial of selective digestive decontamination using oral gentamicin and oral polymyxin E for eradication of carbapenem-resistant Klebsiella pneumoniae carriage. Infect Control Hosp Epidemiol 2012, 33:14-19.
  • [73]Agusti C, Pujol M, Argerich MJ, et al.: Short term effect of the application of selective decontamination of the digestive tract on different body site reservoir ICU patients colonized by multi-resistant Acinetobacter baumanii. J Antimicrobial Chemother 2002, 49:205-208.
  • [74]Oostdijk EA, de Smet AM, Kesecioglu J, Bonten MJ, Dutch SOD-SDD trialist group: Decontamination of cephalosporin-resistant Enterobacteriaceae during selective digestive decontamination in intensive care units. J Antimicrob Chemother 2012, 67:2250-2253.
  • [75]Gough E, Shaikh H, Manges AR: Systematic review of intestinal mocrobiota transplantation (fecal bacteriotherapy) for recurrent Clostridium difficile infection. Clin Infect Dis 2011, 53:994-1002.
  • [76]Guo B, Harstall C, Louie T, et al.: Systematic review: fecal transplantation for the treatment of Clostridium difficile-associated disease. Aliment Pharmacl Ther 2012, 35:865-875.
  • [77]Russel G, Kaplan J, Ferraro M, Michelow IC: Fecal bacteriotherapy for relapsing Clostridium difficile infection in a child: a proposed treatment protocol. Pediatrics 2010, 126:239-242.
  • [78]Rosales-Mendoza S, Soria-Guerra RE, Lopez-Revilla R, Moreno-Fieros L, Alpuche-Solis AG: Ingestion of transgenic carrots expressing the Escherichia coli heat-labile enterotoxin B subunit protects mice against cholera toxin challenge. Plant Cell Rep 2008, 27:79-84.
  • [79]Harmoinen J, Mentula S, Heikkila M, et al.: Orally administered targeted recombinant B-lactamase prevents ampicillin-induced selective pressure on the gut microbiota: a novel approach to reducing antibacterial resistance. Antimicrob Agents Chemother 2004, 48:75-79.
  • [80]Tarkkanen AM, Heinonen T, Jogi R, et al.: P1A recombinant B-lactamase prevents emergence of antimicrobial resistance in gut microflora of healthy subjects during intra-venous administration of ampicillin. Antimicrob Agents Chemother 2009, 53:2455-2462.
  • [81]Vos MC, Behrendt MD, Melles DC, et al.: Five years of experience implementing a methicillin-resistant Staphylococcus aureus search and destroy policy at the largest University Medical Center in the Netherlands. Infect Control Hosp Epidemiol 2009, 30:977-984.
  • [82]Bocher S, Skov RL, Knudsen MA, et al.: The search and destroy strategy prevents spread and long-term carriage of methicillin-resistant Staphylococcus aureus: results from the follow-up screening of a large ST22 (E-MRSA 15) outbreak in Denmark. Clin Microbiol Infect 2010, 16:1427-1434.
  • [83]Higgins A, Lynch M, Gethin G: Can “search and destroy” reduce nosocomial methicillin-resistant Staphylococcus aureus in an Irish hospital. J Hosp Infect 2010, 75:120-123.
  • [84]Tosh PK, McDonald LC: Infection control in the multidrug-resistant era: tending the human microbiome. Clin Infect Dis 2012, 54:707-713.
  • [85]Blaser M: Stop the killing of beneficial bacteria. Nature 2012, 476:393-394.
  • [86]Thevenon F, Agatte T, Widdi W, Poté J: Antibiotic resistant bacteria/genes dissemination in lacustrine sediments highly increased following cultural eutrophication of Lake Geneva (Switzerland). Chemosphere 2012, 86:468-476.
  • [87]Schwaber MJ, Lev B, Israeli A, et al.: Containment of a country wide outbreak of carbapenem-resistant Klebsiella pneumoniae in Israeli hospitals via a nationally implemented intervention. Clin Infect Dis 2011, 52:848-855.
  文献评价指标  
  下载次数:6次 浏览次数:19次