| Biotechnology for Biofuels | |
| Modular design of metabolic network for robust production of n-butanol from galactose–glucose mixtures | |
| Hyun Gyu Lim2  Jae Hyung Lim1  Gyoo Yeol Jung1  | |
| [1] School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, 77 Cheongam-Ro, Pohang 37673, Gyeongbuk, Korea | |
| [2] Department of Chemical Engineering, Pohang University of Science and Technology, 77 Cheongam-Ro, Pohang 37673, Gyeongbuk, Korea | |
| 关键词: Butanol; Redox balance; Galactose; Synthetic biology; Metabolic engineering; | |
| Others : 1228143 DOI : 10.1186/s13068-015-0327-7 |
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| received in 2015-05-11, accepted in 2015-08-25, 发布年份 2015 | |
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【 摘 要 】
Background
Refactoring microorganisms for efficient production of advanced biofuel such as n-butanol from a mixture of sugars in the cheap feedstock is a prerequisite to achieve economic feasibility in biorefinery. However, production of biofuel from inedible and cheap feedstock is highly challenging due to the slower utilization of biomass-driven sugars, arising from complex assimilation pathway, difficulties in amplification of biosynthetic pathways for heterologous metabolite, and redox imbalance caused by consuming intracellular reducing power to produce quite reduced biofuel. Even with these problems, the microorganisms should show robust production of biofuel to obtain industrial feasibility. Thus, refactoring microorganisms for efficient conversion is highly desirable in biofuel production.
Results
In this study, we engineered robust Escherichia coli to accomplish high production of n-butanol from galactose–glucose mixtures via the design of modular pathway, an efficient and systematic way, to reconstruct the entire metabolic pathway with many target genes. Three modular pathways designed using the predictable genetic elements were assembled for efficient galactose utilization, n-butanol production, and redox re-balancing to robustly produce n-butanol from a sugar mixture of galactose and glucose. Specifically, the engineered strain showed dramatically increased n-butanol production (3.3-fold increased to 6.2 g/L after 48-h fermentation) compared to the parental strain (1.9 g/L) in galactose-supplemented medium. Moreover, fermentation with mixtures of galactose and glucose at various ratios from 2:1 to 1:2 confirmed that our engineered strain was able to robustly produce n-butanol regardless of sugar composition with simultaneous utilization of galactose and glucose.
Conclusions
Collectively, modular pathway engineering of metabolic network can be an effective approach in strain development for optimal biofuel production with cost-effective fermentable sugars. To the best of our knowledge, this study demonstrated the first and highest n-butanol production from galactose in E. coli. Moreover, robust production of n-butanol with sugar mixtures with variable composition would facilitate the economic feasibility of the microbial process using a mixture of sugars from cheap biomass in the near future.
【 授权许可】
2015 Lim et al.
【 预 览 】
| Files | Size | Format | View |
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| 20151010002024666.pdf | 1594KB | ||
| Fig.5. | 79KB | Image | |
| Fig.4. | 41KB | Image | |
| Fig.3. | 44KB | Image | |
| Fig.2. | 22KB | Image | |
| Fig.1. | 55KB | Image |
【 图 表 】
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【 参考文献 】
- [1]Wargacki AJ, Leonard E, Win MN, Regitsky DD, Santos CNS, Kim PB, et al.: An engineered microbial platform for direct biofuel production from brown macroalgae. Science 2012, 335(6066):308-313.
- [2]Paulová L, Patáková P, Branská B, Rychtera M, Melzoch K: Lignocellulosic ethanol: technology design and its impact on process efficiency. Biotechnol Adv 2014.
- [3]Atsumi S, Liao JC: Metabolic engineering for advanced biofuels production from Escherichia coli. Curr Opin Biotechnol 2008, 19(5):414-419.
- [4]Zhang F, Rodriguez S, Keasling JD: Metabolic engineering of microbial pathways for advanced biofuels production. Metab Eng 2011, 22(6):775-783.
- [5]Choi YJ, Lee SY: Microbial production of short-chain alkanes. Nature 2013, 502(7472):571-574.
- [6]Peralta-Yahya PP, Zhang F, del Cardayre SB, Keasling JD: Microbial engineering for the production of advanced biofuels. Nature 2012, 488(7411):320-328.
- [7]Lan EI, Liao JC: Microbial synthesis of n-butanol, isobutanol, and other higher alcohols from diverse resources. Bioresour Technol 2013, 135:339-349.
- [8]Park J-H, Hong J-Y, Jang HC, Oh SG, Kim S-H, Yoon J-J, et al.: Use of Gelidium amansii as a promising resource for bioethanol: a practical approach for continuous dilute-acid hydrolysis and fermentation. Bioresour Technol 2012, 108:83-88.
- [9]Abreu AP, Fernandes B, Vicente AA, Teixeira J, Dragone G: Mixotrophic cultivation of Chlorella vulgaris using industrial dairy waste as organic carbon source. Bioresour Technol 2012, 118:61-66.
- [10]Lim HG, Seo SW, Jung GY: Engineered Escherichia coli for simultaneous utilization of galactose and glucose. Bioresour Technol 2013, 135:564-567.
- [11]Ha SJ, Galazka JM, Kim SR, Choi JH, Yang XM, Seo JH, et al.: Engineered Saccharomyces cerevisiae capable of simultaneous cellobiose and xylose fermentation. Proc Natl Acad Sci USA 2011, 108(2):504-509.
- [12]Sheppard MJ, Kunjapur AM, Wenck SJ, Prather KLJ: Retro-biosynthetic screening of a modular pathway design achieves selective route for microbial synthesis of 4-methyl-pentanol. Nat Commun 2014, 5:5031.
- [13]Xu P, Gu Q, Wang W, Wong L, Bower AGW, Collins CH, et al.: Modular optimization of multi-gene pathways for fatty acids production in E. coli. Nat Commun 2013, 4:1409.
- [14]Ajikumar PK, Xiao W-H, Tyo KEJ, Wang Y, Simeon F, Leonard E, et al.: Isoprenoid pathway optimization for taxol precursor overproduction in Escherichia coli. Science 2010, 330(6000):70-74.
- [15]Seo SW, Yang J, Min BE, Jang S, Lim JH, Lim HG, et al.: Synthetic biology: tools to design microbes for the production of chemicals and fuels. Biotechnol Adv 2013, 31(6):811-817.
- [16]Nielsen J, Fussenegger M, Keasling J, Lee SY, Liao JC, Prather K, et al.: Engineering synergy in biotechnology. Nat Chem Biol 2014, 10(5):319-322.
- [17]Keasling JD: Manufacturing molecules through metabolic engineering. Science 2010, 330(6009):1355-1358.
- [18]Lim JH, Seo SW, Kim SY, Jung GY: Model-driven rebalancing of the intracellular redox state for optimization of a heterologous n-butanol pathway in Escherichia coli. Metab Eng 2013, 20:56-62.
- [19]Lim JH, Seo SW, Kim SY, Jung GY: Refactoring redox cofactor regeneration for high-yield biocatalysis of glucose to butyric acid in Escherichia coli. Bioresour Technol 2013, 135:568-573.
- [20]Lo T-M, Teo WS, Ling H, Chen B, Kang A, Chang MW: Microbial engineering strategies to improve cell viability for biochemical production. Biotechnol Adv 2013, 31(6):903-914.
- [21]McGinnis JF, Paigen K: Catabolite inhibition: a general phenomenon in the control of carbohydrate utilization. J Bacteriol 1969, 100(2):902-913.
- [22]Seo SW, Yang J-S, Kim I, Yang J, Min BE, Kim S, et al.: Predictive design of mRNA translation initiation region to control prokaryotic translation efficiency. Metab Eng 2013, 15:67-74.
- [23]Atsumi S, Cann AF, Connor MR, Shen CR, Smith KM, Brynildsen MP, et al.: Metabolic engineering of Escherichia coli for 1-butanol production. Metab Eng 2008, 10(6):305-311.
- [24]Kim Y, Ingram LO, Shanmugam KT: Construction of an Escherichia coli K-12 mutant for homoethanologenic fermentation of glucose or xylose without foreign genes. Appl Environ Microbiol 2007, 73(6):1766-1771.
- [25]Balzer GJ, Thakker C, Bennett GN, San KY: Metabolic engineering of Escherichia coli to minimize byproduct formate and improving succinate productivity through increasing NADH availability by heterologous expression of NAD(+)-dependent formate dehydrogenase. Metab Eng 2013, 20:1-8.
- [26]Nielsen DR, Leonard E, Yoon SH, Tseng HC, Yuan C, Prather KLJ: Engineering alternative butanol production platforms in heterologous bacteria. Metab Eng 2009, 11(4–5):262-273.
- [27]Shen CR, Lan EI, Dekishima Y, Baez A, Cho KM, Liao JC: Driving forces enable high-titer anaerobic 1-butanol synthesis in Escherichia coli. Appl Environ Microbiol 2011, 77(9):2905-2915.
- [28]Mutripah S, Meinita M, Kang J-Y, Jeong G-T, Susanto AB, Prabowo R, et al.: Bioethanol production from the hydrolysate of Palmaria palmata using sulfuric acid and fermentation with brewer’s yeast. J Appl Phycol 2014, 26(1):687-693.
- [29]Kaehler S, Kennish R: Summer and winter comparisons in the nutritional value of marine macroalgae from Hong Kong. Bot Mar 1996, 39:11-17.
- [30]Roesijadi G, Jones SB, Snowden-Swan LJ, Zhu Y (2010) Macroalgae as a biomass feedstock: a preliminary analysis. Pacific Northwest National Laboratory. PNNL-19944
- [31]Wei N, Quarterman J, Jin YS: Marine macroalgae: an untapped resource for producing fuels and chemicals. Trends Biotechnol 2013, 31(2):70-77.
- [32]Gorke B, Stulke J: Carbon catabolite repression in bacteria: many ways to make the most out of nutrients. Nat Rev Microbiol 2008, 6(8):613-624.
- [33]Geanacopoulos M, Adhya S: Functional characterization of roles of GalR and GalS as regulators of the gal regulon. J Bacteriol 1997, 179(1):228-234.
- [34]Møller T, Franch T, Udesen C, Gerdes K, Valentin-Hansen P: Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon. Genes Dev 2002, 16(13):1696-1706.
- [35]Wi SG, Kim HJ, Mahadevan SA, Yang D-J, Bae H-J: The potential value of the seaweed Ceylon moss (Gelidium amansii) as an alternative bioenergy resource. Bioresour Technol 2009, 100(24):6658-6660.
- [36]van Hal JW, Huijgen WJJ, López-Contreras AM: Opportunities and challenges for seaweed in the biobased economy. Trends Biotechnol 2014, 32(5):231-233.
- [37]Datsenko KA, Wanner BL: One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 2000, 97(12):6640-6645.
- [38]Lim SI, Min BE, Jung GY: Lagging strand-biased initiation of red recombination by linear double-stranded DNAS. J Mol Biol 2008, 384(5):1098-1105.
- [39]Seo S, Kim S, Jung G: Synthetic regulatory tools for microbial engineering. Biotechnol Bioprocess Eng 2012, 17(1):1-7.
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