Effective computational models of multiscale problems have to account for the impact of unresolved physics on the resolved scales. This dissertation advances our fundamental understanding of multiscale models and develops a mathematically rigorous closure modeling framework by combining the Mori-Zwanzig (MZ) formalism of Statistical Mechanics with the variational multiscale (VMS) method. This approach leverages scale-separation projectors as well as phase-space projectors to provide a systematic modeling approach that is applicable to complex non-linear partial differential equations. %The MZ-VMS framework is investigated in the context of turbulent flows. Spectral as well as continuous and discontinuous finite element methods are considered.The MZ-VMS framework leads to a closure term that is non-local in time and appears as a convolution or memory integral. The resulting non-Markovian system is used as a starting point for model development. Several new insights are uncovered: It is shown that unresolved scales lead to memory effects that are driven by an orthogonal projection of the coarse-scale residual and, in the case of finite elements, inter-element jumps. Connections between MZ-based methods, artificial viscosity, and VMS models are explored.The MZ-VMS framework is investigated in the context of turbulent flows. Large eddy simulations of Burgers;; equation, turbulent flows, and magnetohydrodynamic turbulence using spectral and discontinuous Galerkin methods are explored. In the spectral method case, we show that MZ-VMS models lead to substantial improvements in the prediction of coarse-grained quantities of interest. Applications to discontinuous Galerkin methods show that modern flux schemes can inherently capture memory effects, and that it is possible to guarantee non-linear stability and conservation via the MZ-VMS approach. We conclude by demonstrating how ideas from MZ-VMS can be adapted for shock-capturing and filtering methods.
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Variational Multiscale Modeling and Memory Effects in Turbulent Flow Simulations