FAIRness and Usability for Open-Access Omics Data Systems

Berrios, Daniel C ; Beheshti, Afshin ; Costes, Sylvain V

关键词: BIOINFORMATICS;    GENOME;    GENETICS;    EXOBIOLOGY;    DATA SYSTEMS;    COMPUTER SYSTEMS DESIGN;    DATA BASES;    BIG DATA;    METADATA;    INTEROPERABILITY;   

RP-ID  :  ARC-E-DAA-TN53608

美国|英语

来源: NASA Technical Reports Server

【 摘 要 】

Omics data sharing is especially crucial to the biological research community, and the last decade or two has seen a huge rise in collaborative analysis systems, databases, and knowledge bases for omics and other systems biology data. We assessed the "FAIRness" of NASA's GeneLab Data Systems (GLDS) along with four similar kinds of systems in the research omics data domain, using 14 FAIRness metrics. 14 metrics. The range of Pass ratings was 29-79% of the 14 metrics, Partial Pass 0-21%, and Fail 7-50%. The range of overall FAIRness scores was 5-12 (out of 14). The systems we evaluated performed the best in the areas of data findability and accessibility, and worst in the area of data interoperability. We propose two new principles that Big Data systems, in particular, should consider for increasing data accessibility. We relate our experiences implementing semantic integration of omics data from several systems for the federated querying and retrieval functions of the GLDS, given the shortcomings in data interoperability of these systems.