A deconvolution method is presented for estimating input data from measured output data and a model of the dynamic process involved. The method uses an optimal Wiener filter for separating the measured data into signal and noise components, and a high-accuracy Fourier transform for inverting the model dynamics in the frequency domain. The method is an extension of optimal Fourier smoothing, and uses a technique to enhance the contrast between the signal and noise spectra in designing the Wiener filter. The deconvolution method was applied to simulation and flight test data for the purposes of removing unwanted distortions introduced by signal-conditioning filters and sensor dynamics, and for reconstructing turbulence inputs from measured sensor data. Results indicated hat the method performs well given good signal-to-noise levels and accurate models of the dynamic process.