Amazon droughts, including the 2015-2016 El Ni~no, may reduce forest net primary productivityand increase canopy tree mortality, thereby altering both the short- and the longtermnet forest carbon balance. Given the broad extent of drought impacts, inventory plots oreddy flux towers may not capture regional variability in forest response to drought. We used multi-temporal airborne Lidar data and field measurements of coarse woodydebris to estimate patterns of canopy turnover and associated carbon losses in intact and fragmentedforests in the central Brazilian Amazon between 2013-2014 and 2014-2016. Average annualized canopy turnover rates increased by 65% during the drought period inboth intact and fragmented forests. The average size and height of turnover events was similarfor both time intervals, in contrast to expectations that the 2015-2016 El Ni~no droughtwould disproportionally affect large trees. Lidar biomass relationships between canopyturnover and field measurements of coarse woody debris were modest (R2 0.3), given similarcoarse woody debris production and Lidar-derived changes in canopy volume from singletree and multiple branch fall events. Our findings suggest that El Ni~no conditions accelerated canopy turnover in central Amazonforests, increasing coarse woody debris production by 62% to 1.22 Mg C ha1(exp) yr1(exp) indrought years.