Diagnostic evaluation of a multiplexed RT-PCR microsphere array assay for the detection of foot-and-mouth and look-alike disease viruses

Hindson, B J ; Baker, B R ; Bentley Tammero, L F ; Lenhoff, R J ; Naraghi-Arani, P ; Vitalis, E A ; Slezak, T R ; Hullinger, P J ; Reid, S M ; Ebert, K ; Ferris, N P ; King, D P

关键词: ACCURACY;    AMPLIFICATION;    ANIMALS;    CATTLE;    DETECTION;    DIAGNOSIS;    DIARRHEA;    DISEASES;    DNA;    DOMESTIC ANIMALS;    HYBRIDIZATION;    MICROSPHERES;    RNA;    SCREENS;    SENSITIVITY;    SWINE;    TRANSCRIPTION;    VIRUSES;   

DOI  :  10.2172/922093
RP-ID  :  UCRL-TR-234981
PID  :  OSTI ID: 922093
Others  :  TRN: US200806%%189

学科分类：生物科学（综合）

美国|英语

来源: SciTech Connect

【 摘 要 】

A high-throughput multiplexed assay (Multiplex Version 1.0) was developed for the differential laboratory diagnosis of foot-and-mouth disease virus (FMDV) from viruses which cause clinically similar diseases of livestock. This assay simultaneously screens for five RNA and two DNA viruses using multiplexed reverse transcription PCR (mRT-PCR) amplification coupled with a microsphere hybridization array and flow-cytometric detection. Two of the seventeen primer-probe sets included in this multiplex assay were adopted from previously characterized real-time RT-PCR (rRT-PCR) assays for FMDV. The diagnostic accuracy of the mRT-PCR was evaluated using 287 field samples, including 248 (true positive n= 213, true negative n=34) from suspect cases of foot-and-mouth disease collected from 65 countries between 1965 and 2006 and 39 true negative samples collected from healthy animals. The mRT-PCR assay results were compared with two singleplex rRT-PCR assays, using virus isolation with antigen-ELISA as the reference method. The diagnostic sensitivity of the mRT-PCR assay for FMDV was 93.9% [95% C.I. 89.8-96.4%], compared to 98.1% [95% C.I. 95.3-99.3%] for the two singleplex rRTPCR assays used in combination. In addition, the assay could reliably differentiate between FMDV and other vesicular viruses such as swine vesicular disease virus and vesicular exanthema of swine virus. Interestingly, the mRT-PCR detected parapoxvirus (n=2) and bovine viral diarrhea virus (n=2) in clinical samples, demonstrating the screening potential of this mRT-PCR assay to identify viruses in FMDV-negative material not previously recognized using focused single-target rRT-PCR assays.