Adaptation of the Biolog Phenotype MicroArrayTM Technology to Profile the Obligate Anaerobe Geobacter metallireducens

Joyner, Dominique ; Fortney, Julian ; Chakraborty, Romy ; Hazen, Terry

关键词: 99;    58;    ACETATES;    BETAINE;    DESULFOVIBRIO;    DYES;    ECOLOGY;    GENES;    GLYCINE;    GLYCOLS;    MICROARRAY TECHNOLOGY;    OSMOSIS;    PHENOTYPE;    PRECURSOR;    PROLINE;    SENSITIVITY;    SOLUTES;    SUBSTRATES;    SULFATES;    TETRAZOLIUM;    UREA;    VERIFICATION Biolog OmniLog? Phenotype MicroArr;   

DOI  :  10.2172/985923
RP-ID  :  LBNL-3733E-Poster
PID  :  OSTI ID: 985923
Others  :  TRN: US201017%%250

美国|英语

来源: SciTech Connect

【 摘 要 】

The Biolog OmniLog? Phenotype MicroArray (PM) plate technology was successfully adapted to generate a select phenotypic profile of the strict anaerobe Geobacter metallireducens (G.m.). The profile generated for G.m. provides insight into the chemical sensitivity of the organism as well as some of its metabolic capabilities when grown with a basal medium containing acetate and Fe(III). The PM technology was developed for aerobic organisms. The reduction of a tetrazolium dye by the test organism represents metabolic activity on the array which is detected and measured by the OmniLog(R) system. We have previously adapted the technology for the anaerobic sulfate reducing bacterium Desulfovibrio vulgaris. In this work, we have taken the technology a step further by adapting it for the iron reducing obligate anaerobe Geobacter metallireducens. In an osmotic stress microarray it was determined that the organism has higher sensitivity to impermeable solutes 3-6percent KCl and 2-5percent NaNO3 that result in osmotic stress by osmosis to the cell than to permeable non-ionic solutes represented by 5-20percent ethylene glycol and 2-3percent urea. The osmotic stress microarray also includes an array of osmoprotectants and precursor molecules that were screened to identify substrates that would provide osmotic protection to NaCl stress. None of the substrates tested conferred resistance to elevated concentrations of salt. Verification studies in which G.m. was grown in defined medium amended with 100mM NaCl (MIC) and the common osmoprotectants betaine, glycine and proline supported the PM findings. Further verification was done by analysis of transcriptomic profiles of G.m. grown under 100mM NaCl stress that revealed up-regulation of genes related to degradation rather than accumulation of the above-mentioned osmoprotectants. The phenotypic profile, supported by additional analysis indicates that the accumulation of these osmoprotectants as a response to salt stress does not occur in G.m. and response to stress must occur by other mechanisms. The Phenotype MicroArray technology can be reliably used as a rapid screening tool for characterization in anaerobic microbial ecology.