Occurrence, diversity and community structure of culturable atrazine degraders in industrial and agricultural soils exposed to the herbicide in Shandong Province, P.R. China

BMC Microbiology

Research Article

Hongmei Li¹  Jishun Li¹  Chengyun Li¹  Hetong Yang¹  Xinjian Zhang²  Dmitry P. Bazhanov²  Xiangfeng Chen³ 

[1] Biology Institute of Shandong Academy of Sciences, Jinan, Shandong Province, People’s Republic of China;Key Laboratory for Applied Microbiology of Shandong Province, Ecology Institute (Biotechnology Center) of Shandong Academy of Sciences, Jinan, Shandong Province, People’s Republic of China;Shandong Provincial Analysis and Test Center of Shandong Academy of Sciences, Jinan, Shandong Province, People’s Republic of China;

关键词: Atrazine-degrading bacteria;    Diversity;    Soil bacterial communities;    Arthrobacter;    Gulosibacter;    Nocardioides;    Pseudomonas;    trzN;    atz;   

DOI  :  10.1186/s12866-016-0868-3

 received in 2016-01-28, accepted in 2016-10-26,  发布年份 2016

来源: Springer

【 摘 要 】

BackgroundSoil populations of bacteria rapidly degrading atrazine are critical to the environmental fate of the herbicide. An enrichment bias from the routine isolation procedure prevents studying the diversity of atrazine degraders. In the present work, we analyzed the occurrence, diversity and community structure of soil atrazine-degrading bacteria based on their direct isolation.MethodsAtrazine-degrading bacteria were isolated by direct plating on a specially developed SM agar. The atrazine degradation genes trzN and atzABC were detected by multiplex PCR. The diversity of atrazine degraders was characterized by enterobacterial repetitive intergenic consensus-PCR (ERIC-PCR) genotyping followed by 16S rRNA gene phylogenetic analysis. The occurrence of atrazine-degrading bacteria was also assessed by conventional PCR targeting trzN and atzABC in soil DNA.ResultsA total of 116 atrazine-degrading isolates were recovered from bulk and rhizosphere soils sampled near an atrazine factory and from geographically distant maize fields. Fifteen genotypes were distinguished among 56 industrial isolates, with 13 of them representing eight phylogenetic groups of the genus Arthrobacter. The remaining two were closely related to Pseudomonas alcaliphila and Gulosibacter molinativorax and constituted major components of the atrazine-degrading community in the most heavily contaminated industrial plantless soil. All isolates from the adjacent sites inhabited by cogon grass or common reed were various Arthrobacter spp. with a strong prevalence of A. aurescens group. Only three genotypes were distinguished among 60 agricultural strains. Genetically similar Arthrobacter ureafaciens bacteria which occurred as minor inhabitants of cogon grass roots in the industrial soil were ubiquitous and predominant atrazine degraders in the maize rhizosphere. The other two genotypes represented two distant Nocardioides spp. that were specific to their geographic origins.ConclusionsDirect plating on SM agar enabled rapid isolation of atrazine-degrading bacteria and analysis of their natural diversity in soil. The results obtained provided evidence that contaminated soils harbored communities of genetically distinct bacteria capable of individually degrading and utilizing atrazine. The community structures of culturable atrazine degraders were habitat-specific. Bacteria belonging to the genus Arthrobacter were the predominant degraders of atrazine in the plant rhizosphere.

【 授权许可】

CC BY   
© The Author(s). 2016