Updating the evolutionary history of Carnivora (Mammalia): a new species-level supertree complete with divergence time estimates

BMC Biology

Research Article

Olaf RP Bininda-Emonds¹  Katrin Nyakatura² 

[1] AG Systematics and Evolutionary Biology, IBU-Faculty V, Carl von Ossietzky Universität Oldenburg, Carl von Ossietzky Strasse 9-11, 26111, Oldenburg, Germany;Institute for Systematic Zoology and Evolutionary Biology, Friedrich-Schiller-Universität Jena, Erbertstrasse 1, 07743, Jena, Germany;

关键词: Carnivora;    conservation biology;    divergence times;    diversification;    macroevolution;    phylogenetic supertrees;    supermatrix;    timetree;   

DOI  :  10.1186/1741-7007-10-12

 received in 2011-09-27, accepted in 2012-02-27,  发布年份 2012

来源: Springer

【 摘 要 】

BackgroundAlthough it has proven to be an important foundation for investigations of carnivoran ecology, biology and evolution, the complete species-level supertree for Carnivora of Bininda-Emonds et al. is showing its age. Additional, largely molecular sequence data are now available for many species and the advancement of computer technology means that many of the limitations of the original analysis can now be avoided. We therefore sought to provide an updated estimate of the phylogenetic relationships within all extant Carnivora, again using supertree analysis to be able to analyze as much of the global phylogenetic database for the group as possible.ResultsIn total, 188 source trees were combined, representing 114 trees from the literature together with 74 newly constructed gene trees derived from nearly 45,000 bp of sequence data from GenBank. The greater availability of sequence data means that the new supertree is almost completely resolved and also better reflects current phylogenetic opinion (for example, supporting a monophyletic Mephitidae, Eupleridae and Prionodontidae; placing Nandinia binotata as sister to the remaining Feliformia). Following an initial rapid radiation, diversification rate analyses indicate a downturn in the net speciation rate within the past three million years as well as a possible increase some 18.0 million years ago; numerous diversification rate shifts within the order were also identified.ConclusionsTogether, the two carnivore supertrees remain the only complete phylogenetic estimates for all extant species and the new supertree, like the old one, will form a key tool in helping us to further understand the biology of this charismatic group of carnivores.

【 授权许可】

CC BY   
© Nyakatura and Bininda-Emonds; licensee BioMed Central Ltd. 2012