Identification and analysis of divergent immune gene families within the Tasmanian devil genome

BMC Genomics

Research Article

Anthony T. Papenfuss¹  Yuanyuan Cheng²  Katherine Belov²  Katrina M. Morris²  Wesley Warren³ 

[1] Bioinformatics Division, The Walter and Eliza Hall Institute for Medical Research, Parkville, VIC, Australia;Bioinformatics and Cancer Genomics, Research Division, Peter MacCallum Cancer Centre, East Melbourne, VIC, Australia;Faculty of Veterinary Science, University of Sydney, Camperdown, NSW, Australia;Washington University School of Medicine, 4444 Forest Park Ave, 63108, St Louis, MO, USA;

关键词: Tasmanian devil;    Sarcophilus harrisii;    Conservation;    Immunome;    Cytokine;    Chemokine Immunoglobulin;    T-cell receptor;   

DOI  :  10.1186/s12864-015-2206-9

 received in 2015-09-07, accepted in 2015-11-12,  发布年份 2015

来源: Springer

【 摘 要 】

BackgroundThe Tasmanian devil (Sarcophilus harrisii) is being threatened with extinction in the wild by a disease known as devil facial tumour disease (DFTD). In order to prevent the spread of this disease a thorough understanding of the Tasmanian devil immune system and its response to the disease is required. In 2011 and 2012 two genome sequencing projects of the Tasmania devil were released. This has provided us with the raw data required to begin to investigate the Tasmanian devil immunome in depth. In this study we characterise immune gene families of the Tasmanian devil. We focus on immunoglobulins, T cell receptors and cytokine families.ResultsWe identify and describe 119 cytokines including 40 interleukins, 39 chemokines, 8 interferons, 18 tumour necrosis family cytokines and 14 additional cytokines. Constant regions for immunoglobulins and T cell receptors were also identified. The repertoire of genes in these families was similar to the opossum, however devil specific duplications were seen and orthologs to eutherian genes not previously identified in any marsupial were also identified.ConclusionsBy using multiple data sources as well as targeted search methods, highly divergent genes across the Tasmanian devil immune system were identified and characterised. This understanding will allow for the development of devil specific assays and reagents and allow for future studies into the immune response of the Tasmanian devil immune system to DFTD.

【 授权许可】

CC BY   
© Morris et al. 2015