A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

BMC Genomics

Research Article

Vered Chalifa-Caspi¹  Amos A. Schaffer²  Uri Gat²  Michael Bazarsky²  Karine Levy² 

[1] Bioinformatics Core Facility, National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, 84105, Beer-Sheva, Israel;Department of Cell and Developmental Biology, Life Sciences Institute, Hebrew University of Jerusalem, Edmond Safra Campus, 91904, Jerusalem, Israel;

关键词: Regeneration;    Head vs. tail regeneration;    Nematostella vectensis;    Major axis polarization;    Wnt pathway;    Metalloproteinase;    Homeobox genes;    Cilia;   

DOI  :  10.1186/s12864-016-3027-1

 received in 2016-04-08, accepted in 2016-08-20,  发布年份 2016

来源: Springer

【 摘 要 】

BackgroundThe ability of regeneration is essential for the homeostasis of all animals as it allows the repair and renewal of tissues and body parts upon normal turnover or injury. The extent of this ability varies greatly in different animals with the sea anemone Nematostella vectensis, a basal cnidarian model animal, displaying remarkable whole-body regeneration competence.ResultsIn order to study this process in Nematostella we performed an RNA-Seq screen wherein we analyzed and compared the transcriptional response to bisection in the wound-proximal body parts undergoing oral (head) or aboral (tail) regeneration at several time points up to the initial restoration of the basic body shape. The transcriptional profiles of regeneration responsive genes were analyzed so as to define the temporal pattern of differential gene expression associated with the tissue-specific oral and aboral regeneration. The identified genes were characterized according to their GO (gene ontology) assignations revealing groups that were enriched in the regeneration process with particular attention to their affiliation to the major developmental signaling pathways. While some of the genes and gene groups thus analyzed were previously known to be active in regeneration, we have also revealed novel and surprising candidate genes such as cilia-associated genes that likely participate in this important developmental program.ConclusionsThis work highlighted the main groups of genes which showed polarization upon regeneration, notably the proteinases, multiple transcription factors and the Wnt pathway genes that were highly represented, all displaying an intricate temporal balance between the two sides. In addition, the evolutionary comparison performed between regeneration in different animal model systems may reveal the basic mechanisms playing a role in this fascinating process.

【 授权许可】

CC BY   
© The Author(s). 2016