De novo transcriptome sequencing and gene expression analysis reveal potential mechanisms of seed abortion in dove tree (Davidia involucrata Baill.)

BMC Plant Biology

Research Article

Xujie Dong¹  Wen Xu¹  Fuxiang Cao¹  Rui Ren¹  Meng Li¹  Jiqing Peng¹  Zhiming Liu²  Jane Liu² 

[1] Key Laboratory of Cultivation and Protection for Non-wood Forest Trees, Ministry of Education, College of Life Science and Technology; Central South University of Forestry and Technology, Changsha, People’s Republic of China;Key Laboratory of Cultivation and Protection for Non-wood Forest Trees, Ministry of Education, College of Life Science and Technology; Central South University of Forestry and Technology, Changsha, People’s Republic of China;Department of Biology, Eastern New Mexico University, 88130, Portales, NM, USA;

关键词: Transcriptome;    Adversity stress;    Phytohormone;    Seed abortion;    Integument;    Davidia involucrata;   

DOI  :  10.1186/s12870-016-0772-x

 received in 2016-02-27, accepted in 2016-04-06,  发布年份 2016

来源: Springer

【 摘 要 】

BackgroundDove tree (Davidia involucrata Baill.) is a rare and endangered species. Natural reproduction of dove tree is extremely difficult due to its low fecundity. Serious seed abortion is one of the key factors restraining its sexual reproduction. Understanding the inducements of seed abortion is critical for addressing the issue of offspring production and the survivability of such an endangered species. However, studies on the molecular mechanism of seed abortion in woody plants are lacking, and the dearth of genomic resources for dove tree restricts further research.ResultsIn this study, using the Illumina platform, we performed de novo transcriptome sequencing of the fruit and seed in dove tree. A total of 149,099 transcripts were isolated and then assembled into 72,885 unigenes. Subsequently, differentially expressed genes (DEGs) between normal and abortive seeds were screened. Genes involved in response to stress, hormone signal transduction, programmed cell death, lignin biosynthesis, and secondary cell wall biogenesis showed significant different expression levels between normal and abortive seeds.ConclusionCombined results indicated that the abortive seeds were under the adversity stress, which should be controlled by the maternal plant. Maternally controlled development of integument is assumed to be a critical process for abortion regulation. MYB and WRKY transcription factors, receptor kinase and laccase are considered to be important regulators in seed abortion. Moreover, mass sequence data facilitated further molecular research on this unique species.

【 授权许可】

CC BY   
© Li et al. 2016