Identifying influenza-like illness presentation from unstructured general practice clinical narrative using a text classifier rule-based expert system versus a clinical expert

BMC Medical Informatics and Decision Making

Research Article

Matthew Carnachan¹  Lynn McBain²  Anthony Dowell²  Maria Stubbe²  Michael G. Baker³  Jayden MacRae⁴  Tom Love⁵ 

[1] Compass Health, Wellington, New Zealand;Department of Primary Health Care & General Practice, University of Otago Wellington, Wellington, New Zealand;Department of Public Health, University of Otago Wellington, Wellington, New Zealand;Patients First, Wellington, New Zealand;Sapere Research Group, Wellington, New Zealand;

关键词: Influenza;    Regular Expression;    Influenza Like Illness;    Problem List;    Read Code;   

DOI  :  10.1186/s12911-015-0201-3

 received in 2015-03-09, accepted in 2015-09-28,  发布年份 2015

来源: Springer

【 摘 要 】

BackgroundWe designed and validated a rule-based expert system to identify influenza like illness (ILI) from routinely recorded general practice clinical narrative to aid a larger retrospective research study into the impact of the 2009 influenza pandemic in New Zealand.MethodsRules were assessed using pattern matching heuristics on routine clinical narrative. The system was trained using data from 623 clinical encounters and validated using a clinical expert as a gold standard against a mutually exclusive set of 901 records.ResultsWe calculated a 98.2 % specificity and 90.2 % sensitivity across an ILI incidence of 12.4 % measured against clinical expert classification. Peak problem list identification of ILI by clinical coding in any month was 9.2 % of all detected ILI presentations. Our system addressed an unusual problem domain for clinical narrative classification; using notational, unstructured, clinician entered information in a community care setting. It performed well compared with other approaches and domains. It has potential applications in real-time surveillance of disease, and in assisted problem list coding for clinicians.ConclusionsOur system identified ILI presentation with sufficient accuracy for use at a population level in the wider research study. The peak coding of 9.2 % illustrated the need for automated coding of unstructured narrative in our study.

【 授权许可】

CC BY   
© MacRae et al. 2015