readat: An R package for reading and working with SomaLogic ADAT files

BMC Bioinformatics

Software

Richard J. Cotton¹  Johannes Graumann¹ 

[1] Proteomics Core, Weill Cornell Medicine - Qatar, PO Box 24144, Doha, State of Qatar;

关键词: SomaLogic;    Proteomics;    Dynamic range;    ADAT;    R;    Bioconductor;    Software;   

DOI  :  10.1186/s12859-016-1007-8

 received in 2015-11-19, accepted in 2016-03-31,  发布年份 2016

来源: Springer

【 摘 要 】

BackgroundSomaLogic’s SOMAscan™ assay platform allows the analysis of the relative abundance of over 1300 proteins directly from biological matrices such as blood plasma and serum. The data resulting from the assay is provided in a proprietary text-based format not easily imported into R.Resultsreadat is an R package for working with the SomaLogic ADAT file format. It provides functionality for importing, transforming and annotating data from these files. The package is free, open source, and available on Bioconductor and Bitbucket.Conclusionsreadat integrates into both Bioconductor and traditional R workflows, rendering it easy to make use of ADAT files.

【 授权许可】

CC BY   
© Cotton et al. 2016