An Atlas of annotations of Hydra vulgaris transcriptome

BMC Bioinformatics

Research

Mario Rosario Guarracino¹  Daniela Evangelista¹  Kumar Parijat Tripathi¹ 

[1] Laboratory for Genomics, Transcriptomics and Proteomics (LAB-GTP), High Performance Computing and Networking Institute (ICAR), National Research Council of Italy (CNR) Napoli, Italy, Via Pietro Castellino, 111, Naples, Italy;

关键词: Hydra vulgaris;    Annotations;    Transcriptome;    Database;    PHP;    MySQL;   

DOI  :  10.1186/s12859-016-1172-9

来源: Springer

【 摘 要 】

BackgroundRNA sequencing takes advantage of the Next Generation Sequencing (NGS) technologies for analyzing RNA transcript counts with an excellent accuracy. Trying to interpret this huge amount of data in biological information is still a key issue, reason for which the creation of web-resources useful for their analysis is highly desiderable.ResultsStarting from a previous work, Transcriptator, we present the Atlas of Hydra’s vulgaris, an extensible web tool in which its complete transcriptome is annotated. In order to provide to the users an advantageous resource that include the whole functional annotated transcriptome of Hydra vulgaris water polyp, we implemented the Atlas web-tool contains 31.988 accesible and downloadable transcripts of this non-reference model organism.ConclusionAtlas, as a freely available resource, can be considered a valuable tool to rapidly retrieve functional annotation for transcripts differentially expressed in Hydra vulgaris exposed to the distinct experimental treatments.Web resource URLhttp://www-labgtp.na.icar.cnr.it/Atlas.

【 授权许可】

CC BY   
© The Author(s) 2016