Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016

BMC Bioinformatics

Meeting Abstracts

Sammed Mandape¹  Shruti Sakhare¹  Siddharth Pratap¹  Oluwaseun Ajayi²  Rahul Mudunuri²  Fatih Şen²  Eunice Y. Huang³  Qi Liu⁴  Jing Wang⁵  Yu Shyr⁶  Theodore S. Kalbfleisch⁷  Theodore S. Kalbfleisch⁷  M Scotty DePriest⁸  Stephanie Gehrlich⁹  John C. Carmen⁹  Bernie J. Daigle^1,10  Kelly Sovacool^1,11  Chandrakanth Emani^1,12  Nicholas Johnson^1,12  Joel Campbell^1,13  Jessica Lasher^1,13  Hanady Adam^1,13  Philip Kreisle^1,13  Bethany Oakes^1,13  Chandrakanth Emani^1,13  Aaron Hall^1,13  Joshua Castlen^1,13  Maximilian Valentine^1,13  Ethan Blandford^1,13  Brittany Dixon^1,13  Ginger Gilbert^1,13  Allison Speer^1,13  Diane Grill^1,14  Eric W. Klee^1,14  Jeanette Eckel-Passow^1,14  Jie Na^1,14  Naresh Prodduturi^1,14  Gavin R. Oliver^1,14  Stanley Pounds^1,15  Xueyuan Cao^1,15  Mohammed Sayed^1,16  Juw Won Park^1,17  Eric C. Rouchka^1,18  Deborah Burgess^1,19  AKM Sabbir^2,20  Xiaofei Zhang^2,20  Jerzy W. Jaromczyk^2,20  Harrison Inocencio^2,20  Charles A Phillips^2,21  Yuping Lu^2,21  Michael A. Langston^2,21  Rahul K. Sevakula^2,22  Raghuveer Thirukovalluru^2,22  Nishchal K. Verma^2,22  Douglas J. Jackson^2,23  Mohammad Mohebbi^2,23  Luaire Florian^2,23  John F. Naber^2,23  Yan Cui^2,24  Raul Ribeiro^2,25  Jeffery Rubnitz^2,25  Mike Izban^2,26  Dana Marshall^2,26  James Downing^2,27  Susana Raimondi^2,27  Robert Rooney^2,28  David Hains^2,28  Teeradache Viangteeravat^2,28  Naga Satya V. Rao Nagisetty^2,28  Rony Jose^2,28  Jatinder Lamba^2,29  Michael M. Goodin^3,30  Chanyong Jang^3,30  Mark Farman^3,30  Neil Moore^3,30  Leon Dent^3,31  Sally R. Ellingson^3,32  Kalpani De Silva^3,33  Benjamin J. Harrison^3,34  Julia H. Chariker^3,35  James N. MacLeod^3,36  Michael P. Heaton^3,37 

[1] Bioinformatics and Proteomics Core, Microbiology and Immunology, Meharry Medical College, 37208, Nashville, TN, USA;Biomedical Informatics Core, Children’s Foundation Research Institute, 38103, Memphis, TN, USA;Biomedical Informatics Core, Children’s Foundation Research Institute, 38103, Memphis, TN, USA;Department of Pediatrics, University of Tennessee Health Science Center, 38163, Memphis, TN, USA;Center for Quantitative Sciences, Vanderbilt University School of Medicine, 37232, Nashville, TN, USA;Department of Biomedical Informatics, Vanderbilt University School of Medicine, 37232, Nashville, TN, USA;Center for Quantitative Sciences, Vanderbilt University School of Medicine, 37232, Nashville, TN, USA;Department of Cancer Biology, Vanderbilt University School of Medicine, 37232, Nashville, TN, USA;Center for Quantitative Sciences, Vanderbilt University School of Medicine, 37232, Nashville, TN, USA;Department of Cancer Biology, Vanderbilt University School of Medicine, 37232, Nashville, TN, USA;Department of Biostatistics, Vanderbilt University School of Medicine, 37232, Nashville, TN, USA;Department of Biochemistry and Molecular Genetics, School of Medicine, University of Louisville, 40292, Louisville, KY, USA;Department of Biochemistry and Molecular Genetics, School of Medicine, University of Louisville, 40292, Louisville, KY, USA;Maxwell H. Gluck Equine Research Center, Department of Veterinary Science, University of Kentucky, 40546, Lexington, KY, USA;Department of Biological Sciences, Northern Kentucky University, 41099, Highland Heights, KY, USA;Department of Biological Sciences, University of Memphis, 38152, Memphis, TN, USA;Department of Computer Science, University of Memphis, 38152, Memphis, TN, USA;Department of Biology, University of Kentucky, 40506, Lexington, KY, USA;Department of Biology, Western Kentucky University, 42101, Bowling Green, KY, USA;Department of Biology, Western Kentucky University-Owensboro, 42303, Owensboro, KY, USA;Department of Biomedical Informatics and Statistics, Health Sciences Research, Mayo Clinic, 55905, Rochester, MN, USA;Department of Biostatistics, St. Jude Children’s Research Hospital, 38105, Memphis, TN, USA;Department of Computer Engineering and Computer Science, University of Louisville, 40202, Louisville, KY, USA;Department of Computer Engineering and Computer Science, University of Louisville, 40202, Louisville, KY, USA;Kentucky Biomedical Research Infrastructure Network (KBRIN) Bioinformatics Core, University of Louisville, 40292, Louisville, KY, USA;Department of Computer Engineering and Computer Science, University of Louisville, Duthie Center for Engineering, 40292, Louisville, KY, USA;Kentucky Biomedical Research Infrastructure (KBRIN) Bioinformatics Core, 522 East Gray Street, 40292, Louisville, KY, USA;Department of Computer Science, Northern Kentucky University, 41099, Highland Heights, KY, USA;Department of Computer Science, University of Kentucky, 40506, Lexington, KY, USA;Department of Electrical Engineering and Computer Science, University of Tennessee, 37996-2250, Knoxville, TN, USA;Department of Electrical Engineering, Indian Institute of Technology Kanpur, 208016, Kanpur, India;Department of Electrical and Computer Engineering, University of Louisville, 40292, Louisville, KY, USA;Department of Microbiology, Immunology and Biochemistry, University of Tennessee Health Science Center, 38163, Memphis, TN, USA;Department of Oncology, St. Jude Children’s Research Hospital, 38105, Memphis, TN, USA;Department of Pathology, Anatomy and Cell Biology, Meharry Medical College, 37208, Nashville, TN, USA;Department of Pathology, St. Jude Children’s Research Hospital, 38105, Memphis, TN, USA;Department of Pediatrics, The University of Tennessee Health Science Center, 38103, Memphis, TN, USA;Department of Pharmacotherapy and Translational Research, College of Pharmacy, University of Florida, 32610, Gainesville, FL, USA;Department of Plant Pathology, University of Kentucky, 40546, Lexington, KY, USA;Department of Surgery, Meharry Medical College, 37208, Nashville, TN, USA;Division of Biomedical Informatics, College of Medicine, University of Kentucky, 40536-0093, Lexington, KY, USA;Interdisciplinary Studies Program: Specialization in Bioinformatics, University of Louisville, 40292, Louisville, KY, USA;Kentucky Biomedical Research Infrastructure (KBRIN) Bioinformatics Core, 522 East Gray Street, 40292, Louisville, KY, USA;Department of Anatomical Sciences and Neurobiology, University of Louisville, 40292, Louisville, KY, USA;Kentucky Biomedical Research Infrastructure (KBRIN) Bioinformatics Core, 522 East Gray Street, 40292, Louisville, KY, USA;Department of Psychological and Brain Sciences, University of Louisville, 40292, Louisville, KY, USA;Maxwell H. Gluck Equine Research Center, Department of Veterinary Science, University of Kentucky, 40546, Lexington, KY, USA;United States Department of Agriculture, Agricultural Research Service, United States Meat Animal Research Center, 68933, Clay Center, NE, USA;

关键词: True Negative;    Differential Expression;    UCSC Genome Browser;    Laboratory Information Management System;    Biomedical Informatics;   

DOI  :  10.1186/s12859-016-1154-y

来源: Springer

【 摘 要 】

contentsI1 Proceedings of the Fifteenth Annual UT- KBRIN Bioinformatics Summit 2016Eric C. Rouchka, Julia H. Chariker, Benjamin J. Harrison, Juw Won ParkP1 CC-PROMISE: Projection onto the Most Interesting Statistical Evidence (PROMISE) with Canonical Correlation to integrate gene expression and methylation data with multiple pharmacologic and clinical endpointsXueyuan Cao, Stanley Pounds, Susana Raimondi, James Downing, Raul Ribeiro, Jeffery Rubnitz, Jatinder LambaP2 Integration of microRNA-mRNA interaction networks with gene expression data to increase experimental powerBernie J Daigle, Jr.P3 Designing and writing software for in silico subtractive hybridization of large eukaryotic genomesDeborah Burgess, Stephanie Gehrlich, John C CarmenP4 Tracking the molecular evolution of Pax geneNicholas Johnson; Chandrakanth EmaniP5 Identifying genetic differences in thermally dimorphic and state specific fungi using in silico genomic comparisonStephanie Gehrlich, Deborah Burgess, John C CarmenP6 Identification of conserved genomic regions and variation therein amongst Cetartiodactyla species using next generation sequencingKalpani De Silva, Michael P Heaton, Theodore S KalbfleischP7 Mining physiological data to identify patients with similar medical events and phenotypesTeeradache Viangteeravat, Rahul Mudunuri, Oluwaseun Ajayi, Fatih Şen, Eunice Y HuangP8 Smart brief for home health monitoringMohammad Mohebbi, Luaire Florian, Douglas J Jackson, John F NaberP9 Side-effect term matching for computational adverse drug reaction predictionsAKM Sabbir, Sally R EllingsonP10 Enrichment vs robustness: A comparison of transcriptomic data clustering metricsYuping Lu, Charles A Phillips, Michael A LangstonP11 Deep neural networks for transcriptome-based cancer classificationRahul K Sevakula, Raghuveer Thirukovalluru, Nishchal K. Verma, Yan CuiP12 Motif discovery using K-means clusteringMohammed Sayed, Juw Won ParkP13 Large scale discovery of active enhancers from nascent RNA sequencingJing Wang, Qi Liu, Yu ShyrP14 Computationally characterizing genomic pipelines and benchmarking results using GATK best practices on the high performance computing cluster at the University of KentuckyXiaofei Zhang, Sally R EllingsonP15 Development of approaches enabling the identification of abnormal gene expression from RNA-Seq in personalized oncologyNaresh Prodduturi, Gavin R Oliver, Diane Grill, Jie Na, Jeanette Eckel-Passow, Eric W KleeP16 Processing RNA-Seq data of plants infected with coffee ringspot virusMichael M Goodin, Mark Farman, Harrison Inocencio, Chanyong Jang, Jerzy W Jaromczyk, Neil Moore, Kelly SovacoolP17 Comparative transcriptomics of three Acinetobacter baumanii clinical isolates with different antibiotic resistance patternsLeon Dent, Mike Izban, Sammed Mandape, Shruti Sakhare, Siddharth Pratap, Dana MarshallP18 Metagenomic assessment of possible microbial contamination in the equine reference genome assemblyM Scotty DePriest, James N MacLeod, Theodore S KalbfleischP19 Molecular evolution of cancer driver genesChandrakanth Emani, Hanady Adam, Ethan Blandford, Joel Campbell, Joshua Castlen, Brittany Dixon, Ginger Gilbert, Aaron Hall, Philip Kreisle, Jessica Lasher, Bethany Oakes, Allison Speer, Maximilian ValentineP20 Biorepository Laboratory Information Management SystemNaga Satya V Rao Nagisetty, Rony Jose, Teeradache Viangteeravat, Robert Rooney, David Hains

【 授权许可】

CC BY   
© The Author(s). 2016