Transcriptome-wide m6A methylation in natural yellow leaf of Catalpa fargesii

Frontiers in Plant Science

Plant Science

Linjiao Zhao¹  Wenjun Ma²  Jiwen Hu²  Guanzheng Qu²  Nan Lu²  Yingying Yang²  Junhui Wang²  Pengyue Fu²  Nan Wang²  Yu Zhang² 

[1] Hekou Yao Autonomous County Forestry and Grassland Bureau, Hekou, China;State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry and Northeast Forestry University, Beijing, China;

关键词: Catalpa fargesii;    CfALKBH5;    Epitranscriptomics;    RNA methylation;    N6-methyladenosine;    yellow-green leaf;   

DOI  :  10.3389/fpls.2023.1167789

 received in 2023-02-16, accepted in 2023-05-30,  发布年份 2023

来源: Frontiers

【 摘 要 】

N6-methyladenosine (m6A) is the most abundant internal modification in eukaryotic messenger RNA, and involved in various biological processes in plants. However, the distribution features and functions of mRNA m6A methylation have been poorly explored in woody perennial plants. In this study, a new natural variety with yellow-green leaves, named Maiyuanjinqiu, was screened from the seedlings of Catalpa fargesii. Based on the preliminary experiment, the m6A methylation levels in the leaves of Maiyuanjinqiu were significantly higher than those in C. fargesii. Furthermore, a parallel analysis of m6A-seq and RNA-seq was carried out in different leaf color sectors. The result showed that m6A modification were mostly identified around the 3’-untranslated regions (3’-UTR), which was slightly negatively correlated with the mRNA abundance. KEGG and GO analyses showed that m6A methylation genes were associated with photosynthesis, pigments biosynthesis and metabolism, oxidation-reduction and response to stress, etc. The overall increase of m6A methylation levels in yellow-green leaves might be associated with the decreased the expression of RNA demethylase gene CfALKBH5. The silencing of CfALKBH5 caused a chlorotic phenotype and increased m6A methylation level, which further confirmed our hypothesis. Our results suggested that mRNA m6A methylation could be considered as a vital epigenomic mark and contribute to the natural variations in plants.

【 授权许可】

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Copyright © 2023 Zhang, Wang, Ma, Lu, Fu, Yang, Zhao, Hu, Qu and Wang