Phylogenetic placement of Ceratophyllum submersum based on a complete plastome sequence derived from nanopore long read sequencing data

BMC Research Notes

Research Note

Samuel Nestor Meckoni¹  Boas Pucker²  Benneth Nass³ 

[1] Plant Biotechnology and Bioinformatics, Institute of Plant Biology, TU Braunschweig, 38106, Braunschweig, Germany;Plant Biotechnology and Bioinformatics, Institute of Plant Biology, TU Braunschweig, 38106, Braunschweig, Germany;Braunschweig Integrated Centre of Systems Biology (BRICS), TU Braunschweig, 38106, Braunschweig, Germany;Plant Biotechnology and Bioinformatics, Institute of Plant Biology, TU Braunschweig, 38106, Braunschweig, Germany;Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Kamýcká 129, Praha 6 - Suchdol, CZ-165 21, Prague, Czech Republic;

关键词: ONT;    Angiosperms;    Ceratophyllaceae;    Ceratophyllales plastome;    Plastomics;    Chloroplast-genome phylogenomics;    Phylogenetic pipeline;    Supermatrix tree;   

DOI  :  10.1186/s13104-023-06459-z

 received in 2023-06-29, accepted in 2023-08-14,  发布年份 2023

来源: Springer

【 摘 要 】

ObjectiveEutrophication poses a mounting concern in today’s world. Ceratophyllum submersum L. is one of many plants capable of living in eutrophic conditions, therefore it could play a critical role in addressing the problem of eutrophication. This study aimed to take a first genomic look at C. submersum.ResultsSequencing of gDNA from C. submersum yielded enough reads to assemble a plastome. Subsequent annotation and phylogenetic analysis validated existing information regarding angiosperm relationships and the positioning of Ceratophylalles in a wider phylogenetic context.

【 授权许可】

CC BY   
© BioMed Central Ltd., part of Springer Nature 2023

【 图 表 】

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