Using Global Biodiversity Information Facility Occurrence Data for Automated Invasive Alien Species Risk Mapping

Biodiversity Information Science and Standards

article

Amy J.S. Davis¹  Tim Adriaens²  Rozemien De Troch³  Peter Desmet²  Quentin Groom⁴  Damiano Oldoni²  Lien Reyserhove²  Sonia Vanderhoeven⁵  Diederik Strubbe¹ 

[1] Ghent University;Research Institute for Nature and Forest;Royal Meteorological Institute;Meise Botanic Garden;Belgian Biodiversity Platform

关键词: species distribution models;    automated workflow;    risk assessment;    machine learning;    sampling bias;   

DOI  :  10.3897/biss.4.59172

来源: Pensoft

【 摘 要 】

To support invasive alien species risk assessments, the Tracking Invasive Alien Species (TrIAS) project has developed an automated, open, workflow incorporating state-of-the-art species distribution modelling practices to create risk maps using the open source language R.  It is based on Global Biodiversity Information Facility (GBIF) data and openly published environmental data layers characterizing climate and land cover. Our workflow requires only a species name and generates an ensemble of machine-learning algorithms (Random Forest, Boosted Regression Trees, K-Nearest Neighbors and AdaBoost) stacked together as a meta-model to produce the final risk map at 1 km2 resolution (Fig. 1). Risk maps are generated automatically for standard Intergovernmental Panel on Climate Change (IPCC) greenhouse gas emission scenarios and are accompanied by maps illustrating the confidence of each individual prediction across space, thus enabling the intuitive visualization and understanding of how the confidence of the model varies across space and scenario (Fig. 2). The effects of sampling bias are accounted for by providing options to:  use the sampling effort of the higher taxon the modelled species belongs to (e.g., vascular plants), andto thin species occurrences.The risk maps generated by our workflow are defensible and repeatable and provide forecasts of alien species distributions under further climate change scenarios. They can be used to support risk assessments and guide surveillance efforts on alien species in Europe. The detailied modeling framework and code are available on GitHub: https://github.com/trias-project.

【 授权许可】

Unknown